Evidence map›Paper›PMID 19386811›Full record

ArticlePlant physiology2009

Chloroplast photooxidation-induced transcriptome reprogramming in Arabidopsis immutans white leaf sectors.

Maneesha R Aluru, Jaroslaw Zola, Andrew Foudree, Steven R Rodermel

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 94 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Contrasting Metabolisms in Green and White Leaf Sectors of VariegatedInternational journal of molecular sciences · 2023
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  7. Article
  8. Transcriptome Analysis of Air Space-Type Variegation Formation inInternational journal of molecular sciences · 2022
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  9. Article
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  11. Article
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  13. Article
  14. The Genomic Impact of Mycoheterotrophy in Orchids.Frontiers in plant science · 2021
    Article
  15. Article
  16. Protective Role of Leaf Variegation inInternational journal of molecular sciences · 2019
    Article
  17. Article
  18. Transcriptome Profile of the VariegatedInternational journal of molecular sciences · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Maneesha R AluruDepartment of Genetics, Development, and Cell Biology, Iowa State University, Ames, Iowa 50011, USA.
Jaroslaw Zola
Andrew Foudree
Steven R Rodermel
Iowa State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arabidopsis (Arabidopsis thaliana) immutans (im) has green and white sectoring due to the action of a nuclear recessive gene, IMMUTANS. The green sectors contain normal-appearing chloroplasts, whereas the white sectors contain abnormal chloroplasts that lack colored carotenoids due to a defect in phytoene desaturase activity. Previous biochemical and molecular characterizations of the green leaf sectors revealed alterations suggestive of a source-sink relationship between the green and white sectors of im. In this study, we use an Affymetrix ATH1 oligoarray to further explore the nature of sink metabolism in im white tissues. We show that lack of colored carotenoids in the im white tissues elicits a differential response from a large number of genes involved in various cellular processes and stress responses. Gene expression patterns correlate with the repression of photosynthesis and photosynthesis-related processes in im white tissues, with an induction of Suc catabolism and transport, and with mitochondrial electron transport and fermentation. These results suggest that energy is derived via aerobic and anaerobic metabolism of imported sugar in im white tissues for growth and development. We also show that oxidative stress responses are largely induced in im white tissues; however, im green sectors develop additional energy-dissipating mechanisms that perhaps allow for the formation of green sectors. Furthermore, a comparison of the transcriptomes of im white and norflurazon-treated white leaf tissues reveals global as well as tissue-specific responses to photooxidation. We conclude that the differences in the mechanism of phytoene desaturase inhibition play an important role in differentiating these two white tissues.

Indexed as

Gene Expression ProfilingLightArabidopsisArabidopsis ProteinsChloroplastsGene Expression Regulation, PlantGenes, PlantMetabolic Networks and PathwaysOxidation-ReductionPlant LeavesPyridazinesReverse Transcriptase Polymerase Chain ReactionRNA, MessengerArabidopsis ProteinsIM protein, ArabidopsisnorflurazonePyridazinesRNA, Messenger

Identifiers

PMID19386811
PMCPMC2689989
OpenAlexW1989640467

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.