Evidence map›Paper›PMID 19386804›Full record

ArticlePlant physiology2009

Auxin-responsive genes AIR12 code for a new family of plasma membrane b-type cytochromes specific to flowering plants.

Valeria Preger, Nunzio Tango, Christophe Marchand, Stéphane D Lemaire, Donatella Carbonera, Marilena Di Valentin, Alex Costa, Paolo Pupillo, Paolo Trost

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
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  8. OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
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  14. Arabidopsis AIR12 influences root development.Physiology and molecular biology of plants : an international journal of functional plant biology · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Valeria PregerLaboratory of Molecular Plant Physiology, Department of Experimental Evolutionary Biology, University of Bologna, Bologna 40126, Italy. valeria.preger@unibo.it
Nunzio Tango
Christophe Marchand
Stéphane D Lemaire
Donatella Carbonera
Marilena Di Valentin
Alex Costa
Paolo Pupillo
Paolo Trost
Institut de Biochimie et Biophysique Moléculaire et Cellulaire · FRUniversité Paris-Sud · FRUniversity of Bologna · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report here on the identification of the major plasma membrane (PM) ascorbate-reducible b-type cytochrome of bean (Phaseolus vulgaris) and soybean (Glycine max) hypocotyls as orthologs of Arabidopsis (Arabidopsis thaliana) AIR12 (for auxin induced in root cultures). Soybean AIR12, which is glycosylated and glycosylphosphatidylinositol-anchored to the external side of the PM in vivo, was expressed in Pichia pastoris in a recombinant form, lacking the glycosylphosphatidylinositol modification signal and purified from the culture medium. Recombinant AIR12 is a soluble protein predicted to fold into a beta-sandwich domain and belonging to the DOMON (for dopamine beta-monooxygenase N terminus) domain superfamily. It is shown to be a b-type cytochrome with a symmetrical alpha-band at 561 nm, fully reduced by ascorbate, and fully oxidized by monodehydroascorbate radical. AIR12 is a high-potential cytochrome b showing a wide bimodal dependence from the redox potential between +80 mV and +300 mV. Optical absorption and electron paramagnetic resonance analysis indicate that AIR12 binds a single, highly axial low-spin heme, likely coordinated by methionine-91 and histidine-76, which are strongly conserved in AIR12 sequences. Phylogenetic analyses reveal that the auxin-responsive genes AIR12 represent a new family of PM b-type cytochromes specific to flowering plants. Circumstantial evidence suggests that AIR12 may interact with other redox partners within the PM to constitute a redox link between cytoplasm and apoplast.

Indexed as

Genes, PlantAmino Acid SequenceAscorbic AcidCell MembraneCytochrome b GroupElectrophoresis, Polyacrylamide GelFlowersGlycine maxHemeHypocotylIndoleacetic AcidsMass SpectrometryMolecular Sequence DataOxidation-ReductionPhaseolusPhylogenyAscorbic AcidCytochrome b GroupHemeIndoleacetic AcidsPlant ProteinsSpin Labels

Identifiers

PMID19386804
PMCPMC2689961
OpenAlexW2140772776

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.