Evidence map›Paper›PMID 19386592›Full record

ArticleThe Journal of biological chemistry2009

Decreased expression of cholesterol 7alpha-hydroxylase and altered bile acid metabolism in Apobec-1-/- mice lead to increased gallstone susceptibility.

Yan Xie, Valerie Blanc, Thomas A Kerr, Susan Kennedy, Jianyang Luo, Elizabeth P Newberry, Nicholas O Davidson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Mouse models of gallstone disease.Current opinion in gastroenterology · 2018
    Review
  5. Article
  6. Article
  7. Bile acid metabolism and signaling.Comprehensive Physiology · 2013 · on this map
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. APOBEC-1-mediated RNA editing.Wiley interdisciplinary reviews. Systems biology and medicine
    Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yan XieFrom the Departments of Medicine, St. Louis, Missouri 63110.
Valerie BlancFrom the Departments of Medicine, St. Louis, Missouri 63110.
Thomas A KerrFrom the Departments of Medicine, St. Louis, Missouri 63110.
Susan KennedyFrom the Departments of Medicine, St. Louis, Missouri 63110.
Jianyang LuoFrom the Departments of Medicine, St. Louis, Missouri 63110.
Elizabeth P NewberryFrom the Departments of Medicine, St. Louis, Missouri 63110.
Nicholas O DavidsonFrom the Departments of Medicine, St. Louis, Missouri 63110; Pharmacology and Developmental Biology, Washington University School of Medicine, St. Louis, Missouri 63110. Electronic address: nod@wustl.edu.
University of Missouri–St. Louis · US

Funding

Washington University DDRCC Supplemental Equipment RequestP30DK052574 · NIDDK · WASHINGTON UNIVERSITY · PI Nicholas O. Davidson · 2000 to 2026
$30.8M
HEPATIC SYNTHESIS AND SECRETION OF APOLIPOPROTEIN (A)R01DK056260 · NIDDK · WASHINGTON UNIVERSITY · PI DAVIDSON, NICHOLAS O. · 1999 to 2017
$5.9M
ENTEROHEPATIC LIPID FLUX AND APOPROTEIN BIOSYNTHESIS.R37HL038180 · NHLBI · WASHINGTON UNIVERSITY · PI DAVIDSON, NICHOLAS O. · 2000 to 2009
$5.1M
NHLBI NIH HHS R37 HL038180NIDDK NIH HHS P30 DK052574NIDDK NIH HHS R01 DK056260
6 · The paper itself

Abstract

Quantitative trait mapping in mice identified a susceptibility locus for gallstones (Lith6) spanning the Apobec-1 locus, the structural gene encoding the RNA-specific cytidine deaminase responsible for production of apolipoprotein B48 in mammalian small intestine and rodent liver. This observation prompted us to compare dietary gallstone susceptibility in Apobec-1(-/-) mice and congenic C57BL/6 wild type controls. When fed a lithogenic diet (LD) for 2 weeks, 90% Apobec-1(-/-) mice developed solid gallstones in comparison with 16% wild type controls. LD-fed Apobec-1(-/-) mice demonstrated increased biliary cholesterol secretion as well as increased cholesterol saturation and bile acid hydrophobicity indices. These changes occurred despite a relative decrease in cholesterol absorption in LD-fed Apobec-1(-/-) mice. Among the possible mechanisms to account for this phenotype, expression of Cyp7a1 mRNA and protein were significantly decreased in chow-fed Apobec-1(-/-) mice, decreasing further in LD-fed animals. Cyp7a1 transcription in hepatocyte nuclei, however, was unchanged in Apobec-1(-/-) mice, excluding transcriptional repression as a potential mechanism for decreased Cyp7a1 expression. We demonstrated that APOBEC-1 binds to AU-rich regions of the 3'-untranslated region of the Cyp7a1 transcript, containing the UUUN(A/U)U consensus motif, using both UV cross-linking to recombinant APOBEC-1 and in vivo RNA co-immunoprecipitation. In vivo Apobec-1-dependent modulation of Cyp7a1 expression was further confirmed following adenovirus-Apobec-1 administration to chow-fed Apobec-1(-/-) mice, which rescued Cyp7a1 gene expression. Taken together, the findings suggest that the AU-rich RNA binding-protein Apobec-1 mediates post-transcriptional regulation of murine Cyp7a1 expression and influences susceptibility to diet-induced gallstone formation.

Indexed as

3' Untranslated RegionsAnimalsAnimals, Genetically ModifiedAPOBEC-1 DeaminaseBase SequenceBile Acids and SaltsBinding SitesCholesterolCholesterol 7-alpha-HydroxylaseCytidine DeaminaseDietGallstonesHepatocytesMaleMiceMice, Congenic3' Untranslated RegionsAPOBEC-1 DeaminaseApobec1 protein, mouseBile Acids and SaltsCholesterolCholesterol 7-alpha-HydroxylaseCytidine DeaminaseRecombinant ProteinsRNA, Messenger

Identifiers

PMID19386592
PMCPMC2719322
OpenAlexW2053011873

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.