Evidence map›Paper›PMID 19386587›Full record

ArticleThe Journal of biological chemistry2009

Dual targeting of a tRNAAsp requires two different aspartyl-tRNA synthetases in Trypanosoma brucei.

Fabien Charrière, Patrick O'Donoghue, Sunna Helgadóttir, Laurence Maréchal-Drouard, Marina Cristodero, Elke K Horn, Dieter Söll, André Schneider

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
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  4. The single CCA-adding enzyme ofThe Journal of biological chemistry · 2020
    Article
  5. Article
  6. Review
  7. tRNA biology in mitochondria.International journal of molecular sciences · 2015
    Review
  8. Article
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  11. Article
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  18. A mechanism for functional segregation of mitochondrial and cytosolic genetic codes.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Fabien CharrièreFrom the Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland.
Patrick O'DonoghueDepartment of Molecular Biophysics and Biochemistry and Department of Chemistry, Yale University, New Haven, Connecticut 06520-8114.
Sunna HelgadóttirDepartment of Molecular Biophysics and Biochemistry and Department of Chemistry, Yale University, New Haven, Connecticut 06520-8114.
Laurence Maréchal-DrouardInstitut de Biologie Moléculaire des Plantes, Unité Propre de Recherche 2357 du CNRS, University of Strasbourg, 12 Rue du Général Zimmer, 67084 Strasbourg Cedex, France.
Marina CristoderoFrom the Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland.
Elke K HornFrom the Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland.
Dieter SöllDepartment of Molecular Biophysics and Biochemistry and Department of Chemistry, Yale University, New Haven, Connecticut 06520-8114.
André SchneiderFrom the Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland. Electronic address: andre.schneider@ibc.unibe.ch.
University of Bern · CHYale University · USCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mitochondrion of the parasitic protozoon Trypanosoma brucei does not encode any tRNAs. This deficiency is compensated for by partial import of nearly all of its cytosolic tRNAs. Most trypanosomal aminoacyl-tRNA synthetases are encoded by single copy genes, suggesting the use of the same enzyme in the cytosol and in the mitochondrion. However, the T. brucei genome encodes two distinct genes for eukaryotic aspartyl-tRNA synthetase (AspRS), although the cell has a single tRNAAsp isoacceptor only. Phylogenetic analysis showed that the two T. brucei AspRSs evolved from a duplication early in kinetoplastid evolution and also revealed that eight other major duplications of AspRS occurred in the eukaryotic domain. RNA interference analysis established that both Tb-AspRS1 and Tb-AspRS2 are essential for growth and required for cytosolic and mitochondrial Asp-tRNAAsp formation, respectively. In vitro charging assays demonstrated that the mitochondrial Tb-AspRS2 aminoacylates both cytosolic and mitochondrial tRNAAsp, whereas the cytosolic Tb-AspRS1 selectively recognizes cytosolic but not mitochondrial tRNAAsp. This indicates that cytosolic and mitochondrial tRNAAsp, although derived from the same nuclear gene, are physically different, most likely due to a mitochondria-specific nucleotide modification. Mitochondrial Tb-AspRS2 defines a novel group of eukaryotic AspRSs with an expanded substrate specificity that are restricted to trypanosomatids and therefore may be exploited as a novel drug target.

Indexed as

Adenosine TriphosphateAnimalsAspartate-tRNA LigaseCytosolDrug DesignMitochondriaPhylogenyRNA, Transfer, AspSubstrate SpecificityTransfer RNA AminoacylationTrypanosoma brucei bruceiAdenosine TriphosphateAspartate-tRNA LigaseRNA, Transfer, Asp

Identifiers

PMID19386587
PMCPMC2713517
OpenAlexW2154466598

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.