Evidence map›Paper›PMID 19385689›Full record

ArticleThe journal of physical chemistry. B2009

Computing ion solvation free energies using the dipolar Poisson model.

Patrice Koehl, Henri Orland, Marc Delarue

Abstract readLetter
In one paragraph

Article in The journal of physical chemistry. B, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Understanding nucleic acid-ion interactions.Annual review of biochemistry · 2014
    Review
  3. Gradient Models in Molecular Biophysics: Progress, Challenges, Opportunities.Journal of the mechanical behavior of materials · 2013
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Patrice Koehl
Henri Orland
Marc Delarue

Funding

Geometric-based and Physics-based Simulations of RNA FoldingR01GM080399 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KOEHL, PATRICE A · 2007 to 2011
$1.4M
NIGMS NIH HHS R01 GM080399
6 · The paper itself

Abstract

A new continuum model is presented for computing the solvation free energies of cations in water. It combines in a single formalism based on statistical thermodynamics the Poisson model for electrostatics with the Langevin dipole model to account for nonuniform water dipole distribution around the ions. An excellent match between experimental and computed solvation free energies is obtained for 10 monovalent and divalent ions.

Indexed as

Computer SimulationThermodynamicsIonsPoisson DistributionSolventsIonsSolvents

Identifiers

PMID19385689
PMCPMC2836240

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.