Evidence map›Paper›PMID 19384982›Full record

ArticleBiopolymers2009

Single-molecule pair studies of the interactions of the alpha-GalNAc (Tn-antigen) form of porcine submaxillary mucin with soybean agglutinin.

Marit Sletmoen, Tarun K Dam, Thomas A Gerken, Bjørn T Stokke, Curtis Fred Brewer

Abstract read
In one paragraph

Article in Biopolymers, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

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  10. Mining the "glycocode"--exploring the spatial distribution of glycans in gastrointestinal mucin using force spectroscopy.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2013
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Marit SletmoenBiophysics and Medical Technology, Department of Physics, The Norwegian University of Science and Technology, NO-7491 Trondheim, Norway. marit.sletmoen@ntnu.no
Tarun K Dam
Thomas A Gerken
Bjørn T Stokke
Curtis Fred Brewer
Albert Einstein College of Medicine · USNorwegian University of Science and Technology · NOCase Western Reserve University · US

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
Translational Research in Cystic FibrosisP30DK027651 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI DRUMM, MITCHELL L · 1986 to 2014
$15.6M
MUCIN SITE SPECIFIC O-GLYCOSYLATIONR01CA078834 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI GERKEN, THOMAS A · 1999 to 2012
$3.4M
CAROHYDRATE AND GLYCOPROTEIN INTERACTIONS WITH LECTINSR01CA016054 · NCI · YESHIVA UNIVERSITY · PI BREWER, CURTIS FRED · 1987 to 2006
$3.1M
NCI NIH HHS CA-16054NCI NIH HHS CA-78834NCI NIH HHS P30 CA013330NCI NIH HHS P30 CA-13330NCI NIH HHS R01 CA016054NCI NIH HHS R01 CA078834NIDDK NIH HHS P30 DK027651
6 · The paper itself

Abstract

Mucins form a group of heavily O-glycosylated biologically important glycoproteins that are involved in a variety of biological functions, including modulating immune response, inflammation, and adhesion. Mucins are also involved in cancer and metastasis and often express diagnostic cancer antigens. Recently, a modified porcine submaxillary mucin (Tn-PSM) containing GalNAcalpha1-O-Ser/Thr residues was shown to bind to soybean agglutinin (SBA) with approximately 10(6)-fold enhanced affinity relative to GalNAcalpha1-O-Ser, the pancarcinoma carbohydrate antigen. In this study, dynamic force spectroscopy is used to investigate molecular pairs of SBA and Tn-PSM. A number of force jumps that demonstrate unbinding or rebinding events were observed up to a distance equal to 2.0 microm, consistent with the length of the mucin chain. The unbinding force increased from 103 to 402 pN with increasing force loading rate. The position of the activation barrier in the energy landscape of the interaction was 0.1 nm. The lifetime of the SBA-TnPSM complex in the absence of applied force was determined to be in the range 1.3-1.9 s. Kinetic parameters describing the rate of dissociation of other sugar lectin interactions are in the range 3.3 x 10(-3)-2.5 x 10(-3) s. The long lifetime of the SBA-TnPSM complex is compatible with a binding model in which lectin molecules "bind and jump" from alpha-GalNAc residue to alpha-GalNAc residue along the polypeptide chain of Tn-PSM before dissociating. These findings have important implications for the molecular recognition properties of mucins.

Indexed as

Antigens, Tumor-Associated, CarbohydrateMucinsPlant LectinsSoybean ProteinsSubmandibular GlandAmino Acid SequenceAnimalsLectinsMicroscopy, Atomic ForceMolecular Sequence DataPhytohemagglutininsSequence AlignmentSwineAntigens, Tumor-Associated, CarbohydrateLectinsMucinsPhytohemagglutininsPlant Lectinssoybean lectinSoybean ProteinsTn antigen

Identifiers

PMID19384982
PMCPMC2771728
OpenAlexW2107655357

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.