Evidence map›Paper›PMID 19384868›Full record

ArticleEuropean journal of immunology2009

Binding of LBP-1a to specific immunoglobulin switch regions in vivo correlates with specific repression of class switch recombination.

Karen J Repetny, Xuemei Zhong, Nichol E Holodick, Thomas L Rothstein, Ulla Hansen

Abstract read
In one paragraph

Article in European journal of immunology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Karen J RepetnyDepartment of Biology, Boston University, Boston, MA, USA.
Xuemei Zhong
Nichol E Holodick
Thomas L Rothstein
Ulla Hansen
Boston University · US

Funding

PHORBOL ESTER RESPONSIVE B LYMPHOCYTESR01AI029690 · NIAID · WESTERN MICHIGAN UNIV SCHOOL OF MEDICINE · PI ROTHSTEIN, THOMAS L · 1990 to 2019
$6.9M
RESEARCH TRAINING IN BLOOD DISEASES AND RESOURCEST32HL007501 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI LERNER, ADAM, STEINBERG, MARTIN H. · 1985 to 2018
$5.4M
REGULATION AND FUNCTION OF CYCLIN D3 IN B CELL SUBSETSP01AI060896 · NIAID · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI ROTHSTEIN, THOMAS L · 2004 to 2008
$4.5M
LSF AND MAMMALIAN CELL CYCLE PROGRESSIONR01CA081157 · NCI · BOSTON UNIVERSITY · PI HANSEN, ULLA M · 1999 to 2004
$1.2M
NCI NIH HHS R01 CA081157NHLBI NIH HHS T32 HL007501NHLBI NIH HHS T32 HL07501NIAID NIH HHS P01 AI060896NIAID NIH HHS P01 AI60896NIAID NIH HHS R01 AI029690NIAID NIH HHS R01 AI29690
6 · The paper itself

Abstract

Upon stimulation of mature B cells, class switch recombination (CSR) can alter the specific immunoglobulin heavy chain constant region that is expressed. In a tissue culture cell line, we previously demonstrated that inhibition of late SV40 factor (LSF) family members enhanced IgM to IgA CSR. Here, isotype specificity of CSR regulation by LSF family members is addressed in primary mouse splenic B cells. First, we demonstrate that leader-binding protein-1a (LBP-1a) is the prevalent family member in B lymphocytes. Second, we demonstrate by ChIP that LBP-1a binds genomic sequences around mouse switch (S) regions in an isotype-specific manner, in accordance with computational predictions: binding is observed to Smu and Salpha, but not to the tested Sgamma1, regions. Importantly, binding of LBP-1a is tightly regulated, with occupancy at genomic S regions dramatically decreasing following LPS stimulation. Finally, the consequence of DNA-binding by LBP-1a is determined using bone marrow chimeric mice in which LSF/LBP-1 activity is inhibited in hematopoietic lineages. Upon in vitro stimulation of such primary B cells, CSR occurs with a higher efficiency to IgA, but not to IgG1. These results are supportive of a model whereby LBP-1a represses CSR in an isotype-specific manner via direct interaction with S regions involved in the recombination.

Indexed as

Amino Acid SequenceAnimalsB-LymphocytesChromatin ImmunoprecipitationDNA-Binding ProteinsFlow CytometryImmunoblottingImmunoglobulin Class SwitchingImmunoglobulin IsotypesImmunoglobulin Switch RegionLipopolysaccharidesMaleMiceMice, Inbred BALB CMolecular Sequence DataTransplantation ChimeraDNA-Binding ProteinsImmunoglobulin IsotypesLipopolysaccharidesUbp1 protein, mouse

Identifiers

PMID19384868
PMCPMC3407417
OpenAlexW2088088777

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.