Evidence map›Paper›PMID 19384857›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2009

Toward defining the phosphoproteome of Xenopus laevis embryos.

Jered V McGivern, Danielle L Swaney, Joshua J Coon, Michael D Sheets

Abstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Proteomics of Xenopus development.Molecular human reproduction · 2016
    Article
  8. Article
  9. Article
  10. Article
  11. Molecular changes during egg activation.Current topics in developmental biology · 2013
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jered V McGivernDepartment of Biomolecular Chemistry, University of Wisconsin, Madison, Madison, Wisconsin, USA.
Danielle L Swaney
Joshua J Coon
Michael D Sheets

Funding

Sequential Ion/Ion Reactions for Large Peptide and Whole Protein CharacterizationR01GM080148 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2007 to 2015
$3.0M
Control of Spemann's organizerR01HD043996 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI SHEETS, MICHAEL D · 2003 to 2007
$1.3M
NHGRI NIH HHS 5T32HG002706NICHD NIH HHS R01 HD043996NICHD NIH HHS R01-HD43996NIGMS NIH HHS R01 GM080148NIGMS NIH HHS R01GM080148
6 · The paper itself

Abstract

Phosphorylation is universally used for controlling protein function, but knowledge of the phosphoproteome in vertebrate embryos has been limited. However, recent technical advances make it possible to define an organism's phosphoproteome at a more comprehensive level. Xenopus laevis offers established advantages for analyzing the regulation of protein function by phosphorylation. Functionally unbiased, comprehensive information about the Xenopus phosphoproteome would provide a powerful guide for future studies of phosphorylation in a developmental context. To this end, we performed a phosphoproteomic analysis of Xenopus oocytes, eggs, and embryos using recently developed mass spectrometry methods. We identified 1,441 phosphorylation sites present on 654 different Xenopus proteins, including hundreds of previously unknown phosphorylation sites. This approach identified several phosphorylation sites described in the literature and/or evolutionarily conserved in other organisms, validating the data's quality. These data will serve as a powerful resource for the exploration of phosphorylation and protein function within a developmental context. Developmental Dynamics 238:1433-1443, 2009. (c) 2009 Wiley-Liss, Inc.

Indexed as

Amino Acid SequenceAnimalsGastrulaHumansMass SpectrometryMiceMolecular Sequence DataOocytesPhosphoproteinsPhosphorylationProteomeReproducibility of ResultsSequence AlignmentXenopus laevisPhosphoproteinsProteome

Identifiers

PMID19384857
PMCPMC2865133

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.