Evidence map›Paper›PMID 19383911›Full record

ArticleCancer research2009

Analysis of DNA copy number alterations in ovarian serous tumors identifies new molecular genetic changes in low-grade and high-grade carcinomas.

Kuan-Ting Kuo, Bin Guan, Yuanjian Feng, Tsui-Lien Mao, Xu Chen, Natini Jinawath, Yue Wang, Robert J Kurman, Ie-Ming Shih, Tian-Li Wang

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
20.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 197 citations in OpenAlex.

  1. Biomolecules · 2020
    Trial
  2. Article
  3. Article
  4. Review
  5. Eosinophilic Cells as a Distinct Morphological Feature inDiagnostics (Basel, Switzerland) · 2025
    Article
  6. Review
  7. Targeted Therapies in Low-Grade Serous Ovarian Cancers.Current treatment options in oncology · 2024
    Review
  8. Review
  9. Article
  10. Low-grade serous ovarian cancer: expert consensus report on the state of the science.International journal of gynecological cancer : official journal of the International Gynecological Cancer Society · 2023
    Article
  11. Article
  12. Review
  13. Molecular Status ofIranian journal of pathology · 2023
    Article
  14. Article
  15. Cancers · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Kuan-Ting KuoDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, Maryland, USA.
Bin Guan
Yuanjian Feng
Tsui-Lien Mao
Xu Chen
Natini Jinawath
Yue Wang
Robert J Kurman
Ie-Ming Shih
Tian-Li Wang
National Taiwan University · TWJohns Hopkins University · USVirginia Tech · US

Funding

Molecular Diagnostics for Malignant EffusionR01CA103937 · NCI · JOHNS HOPKINS UNIVERSITY · PI SHIH, IE-MING · 2004 to 2012
$2.7M
The Roles of HBXAP Gene in Ovarian CancerR01CA129080 · NCI · JOHNS HOPKINS UNIVERSITY · PI SHIH, IE-MING · 2008 to 2012
$1.7M
Comprehensive Analysis of Microarray Gene ExpressionR33CA109872 · NCI · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI WANG, YUE · 2005 to 2007
$1.4M
Pathogenesis of Ovarian Serous Borderline TumorsR01CA116184 · NCI · JOHNS HOPKINS UNIVERSITY · PI KURMAN, ROBERT J. · 2007 to 2010
$1.2M
NCI NIH HHS R01 CA103937NCI NIH HHS R01 CA116184NCI NIH HHS R01CA116184NCI NIH HHS R01 CA129080NCI NIH HHS R01CA129080NCI NIH HHS R33 CA109872NCI NIH HHS R33CA109872
6 · The paper itself

Abstract

Ovarian serous carcinoma, the most common and lethal type of ovarian cancer, is thought to develop from two distinct molecular pathways. High-grade (HG) serous carcinomas contain frequent TP53 mutations, whereas low-grade (LG) carcinomas arise from serous borderline tumors (SBT) and harbor mutations in KRAS/BRAF/ERBB2 pathway. However, the molecular alterations involved in the progression from SBT to LG carcinoma remain unknown. In addition, the extent of deletion of tumor suppressors in ovarian serous carcinomas has not been well studied. To further address these two issues, we assessed DNA copy number changes among affinity-purified tumor cells from 37 ovarian serous neoplasms including SBT, LG, and HG tumors using high-density 250K single nucleotide polymorphism arrays. Chromosomal instability index as measured by changes in DNA copy number was significantly higher in HG than in LG serous carcinomas. Hemizygous ch1p36 deletion was common in LG serous carcinomas but was rarely seen in SBT. This region contains several candidate tumor suppressors including miR-34a. In contrast, in HG serous carcinomas, significant numbers of amplifications and deletions, including homozygous deletions, were identified. Among homozygous deletions, loci containing Rb1, CDKN2A/B, CSMD1, and DOCK4 were most common, being present in 10.6%, 6.4%, 6.4%, and 4.3%, respectively, in independent 47 affinity-purified HG serous carcinomas. Except for the CDKN2A/B region, these homozygous deletions were not present in either SBT or LG tumors. Our study provides a genome-wide homozygous deletion profile in HG serous carcinomas, which can serve as a molecular foundation to study tumor suppressors in ovarian cancer.

Indexed as

Gene DosageChromosomal InstabilityChromosomes, Human, Pair 1Chromosomes, Human, Pair 9Cystadenocarcinoma, SerousFemaleGene DeletionGenes, Tumor SuppressorHumansMicroRNAsOvarian NeoplasmsPolymorphism, Single NucleotideMicroRNAsMIRN34 microRNA, human

Identifiers

PMID19383911
PMCPMC2782554
OpenAlexW2013892055

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.