Evidence map›Paper›PMID 19383337›Full record

ArticleMolecular oncology2008

E2-mediated cathepsin D (CTSD) activation involves looping of distal enhancer elements.

Nancy Bretschneider, Sara Kangaspeska, Martin Seifert, George Reid, Frank Gannon, Stefanie Denger

Open access · bronzeAbstract read
In one paragraph

Article in Molecular oncology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 45 citations in OpenAlex.

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  6. Signaling by Steroid Hormones in the 3D Nuclear Space.International journal of molecular sciences · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Nancy BretschneiderEuropean Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117 Heidelberg, Germany. bretschn@embl.de
Sara Kangaspeska
Martin Seifert
George Reid
Frank Gannon
Stefanie Denger
European Molecular Biology Laboratory · DEScience Foundation Ireland · IESoftware (Germany) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Estrogen receptor alpha (ERalpha) is a ligand dependent transcription factor that regulates the expression of target genes through interacting with cis-acting estrogen response elements (EREs). However, only a minority of ERalpha binding sites are located within the proximal promoter regions of responsive genes. Here we report the characterization of an ERE located 9kbp upstream of the TSS of the cathepsin D gene (CTSD) that up-regulates CTSD expression upon estrogen stimulation in MCF-7 cells. Using ChIP, we show recruitment of ERalpha and phosphorylated PolII at the CTSD distal enhancer region. Moreover, we determine the kinetics of transient CpG methylation on the promoter region of CTSD and for the first time, at a distal enhancer element. We show that ERalpha is crucial for long-distance regulation of CTSD expression involving a looping mechanism.

Indexed as

Enhancer Elements, GeneticTranscriptional ActivationBinding SitesCathepsin DCell Line, TumorDNA MethylationDNA Polymerase IIIEstradiolEstrogen Receptor alphaHumansPromoter Regions, GeneticCathepsin DDNA Polymerase IIIESR1 protein, humanEstradiolEstrogen Receptor alpha

Identifiers

PMID19383337
PMCPMC5527762
OpenAlexW2061859333

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.