Evidence map›Paper›PMID 19383158›Full record

ArticleBMC evolutionary biology2009

The chemoreceptor genes of the waterflea Daphnia pulex: many Grs but no Ors.

D Carolina Peñalva-Arana, Michael Lynch, Hugh M Robertson

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 122 citations in OpenAlex.

  1. Article
  2. Molecular bases of insect odorant receptor function: specificity and evolution.Biological reviews of the Cambridge Philosophical Society · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Genomic regions associated with adaptation to predation inProceedings. Biological sciences · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Enormous expansion of the chemosensory gene repertoire in the omnivorous German cockroach Blattella germanica.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2018
    Article
  15. Article
  16. Article
  17. Review
  18. The Two Main Olfactory Receptor Families inFrontiers in cellular neuroscience · 2018
    Review
  19. Article
  20. Sensory Ecology of Predator-Induced Phenotypic Plasticity.Frontiers in behavioral neuroscience · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

D Carolina Peñalva-AranaDepartment of Biology, Indiana University, Bloomington, IN 47405, USA. dcpenalv@indiana.edu
Michael Lynch
Hugh M Robertson
Indiana University Bloomington · USUniversity of Illinois Urbana-Champaign · US

Funding

Gustatory and olfactory receptors of Anopheles gambiaeR01AI056081 · NIAID · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI ROBERTSON, HUGH M. · 2003 to 2006
$1.0M
NIAID NIH HHS AI56081NIAID NIH HHS R01 AI056081
6 · The paper itself

Abstract

backgroundChemoreception is vitally important for all animals, yet little is known about the genetics of chemoreception in aquatic organisms. The keystone species Daphnia pulex, a well known crustacean, is the first aquatic invertebrate to have its genome sequenced. This has allowed us the initial investigation of chemoreceptor genes in an aquatic invertebrate, and to begin the study of chemoreceptor evolution across the arthropod phylum.

resultsWe describe 58 Grs (gustatory receptors), belonging to the insect chemoreceptor superfamily, which were identified bioinformatically in the draft genome of the crustacean waterflea Daphnia pulex. No genes encoding proteins similar to the insect odorant receptors (Ors) were identified. These 58 Grs form 3 distinctive subfamilies of 37, 12, and 5 genes, as well as a highly divergent singleton (Gr58). In addition, Grs55-57 share distinctive amino acid motifs and cluster with the sugar receptors of insects, and may illuminate the origin of this distinctive subfamily. ESTs, tiling array, and PCR amplification results support 34 predicted gene models, and preliminary expression data comparing the sexes indicates potential female-biased expression for some genes.

conclusionThis repertoire of 58 chemoreceptors presumably mediates the many chemoperception abilities of waterfleas. While it is always possible that the entire Or gene lineage was lost at some point in the history of Daphnia pulex, we think it more likely that the insect Or lineage is indeed a relatively recently expanded gene lineage concomitant with the evolution of terrestriality in the insects or their hexapod ancestors.

Indexed as

AnimalsDaphniaFemaleGene Expression RegulationGenetic VariationInsect ProteinsMalePhylogenyReceptors, Cell SurfaceReceptors, OdorantInsect ProteinsReceptors, Cell SurfaceReceptors, Odorant

Identifiers

PMID19383158
PMCPMC2680840
OpenAlexW2063640086

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.