Evidence map›Paper›PMID 19381918›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2009

Preparation and analysis of uniquely positioned mononucleosomes.

Daria A Gaykalova, Olga I Kulaeva, Vladimir A Bondarenko, Vasily M Studitsky

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

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  13. NaMicroscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada · 2022
    Article
  14. Article
  15. Mechanism of curaxin-dependent nucleosome unfolding by FACT.Frontiers in molecular biosciences · 2022
    Article
  16. Mechanisms of Nucleosome Reorganization by PARP1.International journal of molecular sciences · 2021
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Daria A GaykalovaDepartment of Pharmacology, Robert Wood Johnson Medical School, University of Medicine and Dentistry of New Jersey, Piscataway, NJ, USA.
Olga I Kulaeva
Vladimir A Bondarenko
Vasily M Studitsky

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI Rosalie Wollett · 1985 to 2026
$208.6M
Mechanism Transcript Elongation in ChromatinR01GM058650 · NIGMS · WAYNE STATE UNIVERSITY · PI STUDITSKY, VASILY M · 1999 to 2015
$4.7M
NCI NIH HHS P30 CA006973NIGMS NIH HHS GM58650NIGMS NIH HHS R01 GM058650
6 · The paper itself

Abstract

Short DNA fragments containing single, uniquely positioned nucleosome cores have been extensively employed as simple model experimental systems for analysis of many intranuclear processes, including binding of proteins to nucleosomes, transcription, DNA repair and ATP-dependent chromatin remodeling. In many cases such simple model templates faithfully recapitulate numerous important aspects of these processes. Here we describe several recently developed procedures for obtaining and analysis of mononucleosomes that are uniquely positioned on 150-600 bp DNA fragments.

Indexed as

AnimalsBase PairingBase SequenceChickensChromatinDNAErythrocytesHistonesMolecular BiologyNucleosomesTemplates, GeneticTime FactorsChromatinDNAHistonesNucleosomes

Identifiers

PMID19381918
PMCPMC4517586

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.