Evidence map›Paper›PMID 19381162›Full record

ArticleThe pharmacogenomics journal2009

Global variation in CYP2C8-CYP2C9 functional haplotypes.

William C Speed, Soonmo Peter Kang, David P Tuck, Lyndsay N Harris, Kenneth K Kidd

Open access · hybridAbstract read
In one paragraph

Article in The pharmacogenomics journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
5.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 60 citations in OpenAlex.

  1. Guideline
  2. Trial
  3. Article
  4. Review
  5. Association ofCase reports in medicine · 2023
    Article
  6. Article
  7. Review
  8. Sources of Interindividual Variability.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Mini-haplotypes as lineage informative SNPs and ancestry inference SNPs.European journal of human genetics : EJHG · 2012
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

William C SpeedDepartment of Genetics, Yale University School of Medicine, New Haven, CT 06520-8005, USA.
Soonmo Peter Kang
David P Tuck
Lyndsay N Harris
Kenneth K Kidd
Yale Cancer Center · USYale University · USUniversity of Chicago · US

Funding

Theoretical Studies of Linkage DisequilibriumP01GM057672 · NIGMS · YALE UNIVERSITY · PI KIDD, JUDITH R · 1998 to 2008
$11.0M
CONTROLS FOR ASSOCIATION STUDIES OF ALCOHOLISMR01AA009379 · NIAAA · YALE UNIVERSITY · PI KIDD, KENNETH K. · 1992 to 2009
$2.7M
NIAAA NIH HHS AA009379NIAAA NIH HHS R01 AA009379NIGMS NIH HHS GM57672NIGMS NIH HHS P01 GM057672
6 · The paper itself

Abstract

We have studied the global frequency distributions of 10 single nucleotide polymorphisms (SNPs) across 132 kb of CYP2C8 and CYP2C9 in approximately 2500 individuals representing 45 populations. Five of the SNPs were in noncoding sequences; the other five involved the more common missense variants (four in CYP2C8, one in CYP2C9) that change amino acids in the gene products. One haplotype containing two CYP2C8 coding variants and one CYP2C9 coding variant reaches an average frequency of 10% in Europe; a set of haplotypes with a different CYP2C8 coding variant reaches 17% in Africa. In both cases these haplotypes are found in other regions of the world at <1%. This considerable geographic variation in haplotype frequencies impacts the interpretation of CYP2C8/CYP2C9 association studies, and has pharmacogenomic implications for drug interactions.

Indexed as

AfricaAryl Hydrocarbon HydroxylasesAsiaCytochrome P-450 CYP2C8Cytochrome P-450 CYP2C9EuropeGene FrequencyGenetics, PopulationHaplotypesHumansLinkage DisequilibriumPolymorphism, Single NucleotideAryl Hydrocarbon HydroxylasesCYP2C8 protein, humanCYP2C9 protein, humanCytochrome P-450 CYP2C8Cytochrome P-450 CYP2C9

Identifiers

PMID19381162
PMCPMC2782405
OpenAlexW2144767160

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.