Evidence map›Paper›PMID 19380579›Full record

ArticleThe Journal of biological chemistry2009

The isomerase active site of cyclophilin A is critical for hepatitis C virus replication.

Udayan Chatterji, Michael Bobardt, Suganya Selvarajah, Feng Yang, Hengli Tang, Noayo Sakamoto, Gregoire Vuagniaux, Tanya Parkinson, Philippe Gallay

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed, 1 pooled it
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 1 synthesis or guideline pooled it, 194 citations in OpenAlex.

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53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Udayan ChatterjiFrom the Scripps Research Institute, La Jolla, California 92037.
Michael BobardtFrom the Scripps Research Institute, La Jolla, California 92037.
Suganya SelvarajahFrom the Scripps Research Institute, La Jolla, California 92037.
Feng YangFlorida State University, Tallahassee, Florida 32306-4295.
Hengli TangFlorida State University, Tallahassee, Florida 32306-4295.
Noayo SakamotoTokyo Medical and Dental University, Tokyo 113-8519, Japan.
Gregoire VuagniauxDebiopharm, Lausanne 1002, Switzerland.
Tanya ParkinsonPfizer, Sandwich CT13 9NJ, England.
Philippe GallayFrom the Scripps Research Institute, La Jolla, California 92037. Electronic address: gallay@scripps.edu.
Scripps Research Institute · USFlorida State University · USDebiopharm (Switzerland) · CHPfizer (United Kingdom) · GBTokyo Medical and Dental University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyclosporine A and nonimmunosuppressive cyclophilin (Cyp) inhibitors such as Debio 025, NIM811, and SCY-635 block hepatitis C virus (HCV) replication in vitro. This effect was recently confirmed in HCV-infected patients where Debio 025 treatment dramatically decreased HCV viral load, suggesting that Cyps inhibitors represent a novel class of anti-HCV agents. However, it remains unclear how these compounds control HCV replication. Recent studies suggest that Cyps are important for HCV replication. However, a profound disagreement currently exists as to the respective roles of Cyp members in HCV replication. In this study, we analyzed the respective contribution of Cyp members to HCV replication by specifically knocking down their expression by both transient and stable small RNA interference. Only the CypA knockdown drastically decreased HCV replication. The re-expression of an exogenous CypA escape protein, which contains escape mutations at the small RNA interference recognition site, restored HCV replication, demonstrating the specificity for the CypA requirement. We then mutated residues that reside in the hydrophobic pocket of CypA where proline-containing peptide substrates and cyclosporine A bind and that are vital for the enzymatic or the hydrophobic pocket binding activity of CypA. Remarkably, these CypA mutants fail to restore HCV replication, suggesting for the first time that HCV exploits either the isomerase or the chaperone activity of CypA to replicate in hepatocytes and that CypA is the principal mediator of the Cyp inhibitor anti-HCV activity. Moreover, we demonstrated that the HCV NS5B polymerase associates with CypA via its enzymatic pocket. The study of the roles of Cyps in HCV replication should lead to the identification of new targets for the development of alternate anti-HCV therapies.

Indexed as

Base SequenceCatalytic DomainCell LineCyclophilin ACyclophilinsDNA PrimersHepacivirusHepatocytesHumansIn Vitro TechniquesRepliconRNA-Dependent RNA PolymeraseRNA InterferenceRNA, Small InterferingViral Nonstructural ProteinsVirus ReplicationCyclophilin ACyclophilinsDNA PrimersNS-5 protein, hepatitis C virusRNA-Dependent RNA PolymeraseRNA, Small InterferingViral Nonstructural Proteins

Identifiers

PMID19380579
PMCPMC2719337
OpenAlexW2089924322

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.