Evidence map›Paper›PMID 19379498›Full record

ArticleBMC genomics2009

Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction.

Pierre-Edouard Fournier, Khalid El Karkouri, Quentin Leroy, Catherine Robert, Bernadette Giumelli, Patricia Renesto, Cristina Socolovschi, Philippe Parola, Stéphane Audic, Didier Raoult

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it, 121 citations in OpenAlex.

  1. Pooled it
  2. Phylogenetic, genomic and morphological characterization ofInternational journal of systematic and evolutionary microbiology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Distribution and Prevalence ofMicroorganisms · 2023
    Review
  7. Analysis of the Type 4 Effectome across the GenusInternational journal of molecular sciences · 2022
    Article
  8. Tick-Borne Rickettsioses in the Iberian Peninsula.Pathogens (Basel, Switzerland) · 2022
    Review
  9. Infection and immunity · 2022
    Review
  10. Assembly and Comparison ofMicroorganisms · 2022
    Article
  11. Review
  12. Article
  13. Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. WhollymBio · 2017
    Article
  19. Article
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Pierre-Edouard FournierUnité des rickettsies, IFR 48 CNRS UMR 6020, Faculté de médecine, Université de la Méditerranée, 27 Boulevard Jean Moulin, Marseille cedex 05, France. Pierre-Edouard.Fournier@univmed.fr
Khalid El Karkouri
Quentin Leroy
Catherine Robert
Bernadette Giumelli
Patricia Renesto
Cristina Socolovschi
Philippe Parola
Stéphane Audic
Didier Raoult
Centre National de la Recherche Scientifique · FRInstitut de Neurobiologie de la Méditerranée · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Rickettsia genus includes 25 validated species, 17 of which are proven human pathogens. Among these, the pathogenicity varies greatly, from the highly virulent R. prowazekii, which causes epidemic typhus and kills its arthropod host, to the mild pathogen R. africae, the agent of African tick-bite fever, which does not affect the fitness of its tick vector.

resultsWe evaluated the clonality of R. africae in 70 patients and 155 ticks, and determined its genome sequence, which comprises a circular chromosome of 1,278,540 bp including a tra operon and an unstable 12,377-bp plasmid. To study the genetic characteristics associated with virulence, we compared this species to R. prowazekii, R. rickettsii and R. conorii. R. africae and R. prowazekii have, respectively, the less and most decayed genomes. Eighteen genes are present only in R. africae including one with a putative protease domain upregulated at 37 degrees C.

conclusionBased on these data, we speculate that a loss of regulatory genes causes an increase of virulence of rickettsial species in ticks and mammals. We also speculate that in Rickettsia species virulence is mostly associated with gene loss.The genome sequence was deposited in GenBank under accession number [GenBank: NZ_AAUY01000001].

Indexed as

Genome, BacterialPhylogenyAnimalsDNA, BacterialFemaleHumansMaleMultigene FamilyPlasmidsRickettsiaSequence Analysis, DNASpecies SpecificityTicksTranscription, GeneticVirulenceDNA, Bacterial

Identifiers

PMID19379498
PMCPMC2694212
OpenAlexW2047921768

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.