Evidence map›Paper›PMID 19378296›Full record

ArticleChemMedChem2009

Derivation of a retinoid X receptor scaffold from peroxisome proliferator-activated receptor gamma ligand 1-Di(1H-indol-3-yl)methyl-4-trifluoromethylbenzene.

Marcia I Dawson, Mao Ye, Xihua Cao, Lulu Farhana, Qiong-Ying Hu, Yong Zhao, Li Ping Xu, Alice Kiselyuk, Ricardo G Correa, Li Yang and 7 more

Open access · greenAbstract read
In one paragraph

Article in ChemMedChem, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. The retinoid X receptors and their ligands.Biochimica et biophysica acta · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Marcia I DawsonCancer Center, Burnham Institute for Medical Research, 10901 North Torrey Pines Rd., La Jolla, CA 92037, USA. mdawson@burnham.org
Mao Ye
Xihua Cao
Lulu Farhana
Qiong-Ying Hu
Yong Zhao
Li Ping Xu
Alice Kiselyuk
Ricardo G Correa
Li Yang
Tingjun Hou
John C Reed
Pamela Itkin-Ansari
Fred Levine
Michel F Sanner
Joseph A Fontana
Xiao-Kun Zhang
Sanford Burnham Prebys Medical Discovery Institute · USScripps Research Institute · USWayne State University · USJohn D. Dingell VA Medical Center · USUniversity of California, San Diego · US

Funding

Rexinoid Synergy in Prostate Cancer ApoptosisR01CA107039 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI DAWSON, MARCIA I. · 2005 to 2009
$2.5M
NCI NIH HHS R01 CA107039
6 · The paper itself

Abstract

PPARgamma agonist DIM-Ph-4-CF(3), a template for RXRalpha agonist (E)-3-[5-di(1-methyl-1H-indol-3-yl)methyl-2-thienyl] acrylic acid: DIM-Ph-CF(3) is reported to inhibit cancer growth independent of PPARgamma and to interact with NR4A1. As both receptors dimerize with RXR, and natural PPARgamma ligands activate RXR, DIM-Ph-4-CF(3) was investigated as an RXR ligand. It displaces 9-cis-retinoic acid from RXRalpha but does not activate RXRalpha. Structure-based direct design led to an RXRalpha agonist.1-Di(1H-indol-3-yl)methyl-4-trifluoromethylbenzene (DIM-Ph-4-CF(3)) is reported to inhibit cancer cell growth and to act as a transcriptional agonist of peroxisome proliferator-activated receptor gamma (PPARgamma) and nuclear receptor 4A subfamily member 1 (NR4A1). In addition, DIM-Ph-4-CF(3) exerts anticancer effects independent of these receptors because PPARgamma antagonists do not block its inhibition of cell growth, and the small pocket in the NR4A1 crystal structure suggests no ligand can bind. Because PPARgamma and NR4A1 heterodimerize with retinoid X receptor (RXR), and several PPARgamma ligands transcriptionally activate RXR, DIM-Ph-4-CF(3) was investigated as an RXR ligand. DIM-Ph-4-CF(3) displaces 9-cis-retinoic acid from RXRalpha but does not transactivate RXRalpha. Structure-based design using DIM-Ph-4-CF(3) as a template led to the RXRalpha transcriptional agonist (E)-3-[5-di(1-methyl-1H-indol-3-yl)methyl-2-thienyl]acrylic acid. Its docked pose in the RXRalpha ligand binding domain suggests that binding is stabilized by interactions of its carboxylate group with arginine 316, its indoles with cysteines 269 and 432, and its 1-methyl groups with hydrophobic residues lining the binding pocket. As is expected of a selective activator of RXRalpha, but not of RARs and PPARgamma, this RXRalpha agonist, unlike DIM-Ph-4-CF(3), does not appreciably decrease cancer cell growth or induce apoptosis at pharmacologically relevant concentrations.

Indexed as

Binding, CompetitiveBinding SitesCell Line, TumorComputer SimulationDNA-Binding ProteinsDrug DesignDrug Screening Assays, AntitumorFluorobenzenesHumansLigandsNuclear Receptor Subfamily 4, Group A, Member 1PPAR gammaReceptors, SteroidRetinoid X ReceptorsDNA-Binding ProteinsFluorobenzenesLigandsNR4A1 protein, humanNuclear Receptor Subfamily 4, Group A, Member 1PPAR gammaReceptors, SteroidRetinoid X Receptors

Identifiers

PMID19378296
PMCPMC3031428
OpenAlexW2163626357

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.