ArticleMethods in molecular biology (Clifton, N.J.)2009
Analysis of distant communication on defined chromatin templates in vitro.
Article in Methods in molecular biology (Clifton, N.J.), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
8 citing papers in PubMed, 12 citations in OpenAlex.
- Geometric variations in nucleosomal DNA dictate higher-order chromatin structure and enhancer-promoter communication.The Journal of chemical physics · 2024Article
- The anti-cancer drugs curaxins target spatial genome organization.Nature communications · 2019Article
- Towards quantitative analysis of gene regulation by enhancers.Epigenomics · 2017Review
- Nucleosome-free DNA regions differentially affect distant communication in chromatin.Nucleic acids research · 2017Article
- Insights into Gene Expression and Packaging from Computer Simulations.Biophysical reviews · 2012Article
- Internucleosomal interactions mediated by histone tails allow distant communication in chromatin.The Journal of biological chemistry · 2012Article
- Theoretical analysis of the role of chromatin interactions in long-range action of enhancers and insulators.Proceedings of the National Academy of Sciences of the United States of America · 2011Article
- [Opposite Effects of Histone H1 and HMGN5 Protein on Distant Interactions in Chromatin].Molekuliarnaia biologiiaArticle
Corrections and comments
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
Abstract
Regulation of many biological processes in eukaryotes involves distant communication between the regulatory DNA sequences (e.g., enhancers) and their targets over the DNA regions organized in chromatin. However previously developed methods for analysis of communication in chromatin in vitro are artifact-prone and/or do not allow analysis of communication on physiologically relevant, saturated arrays of nucleosomes. Here we describe a method for quantitative analysis of the rate of distant communication in cis on saturated arrays of nucleosomes capable of forming the 30-nm chromatin fibers in vitro.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.