Evidence map›Paper›PMID 19377483›Full record

ArticleNature structural & molecular biology2009

A plant 5S ribosomal RNA mimic regulates alternative splicing of transcription factor IIIA pre-mRNAs.

Ming C Hammond, Andreas Wachter, Ronald R Breaker

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Cellular roadmaps of viroid infection.Trends in microbiology · 2023
    Review
  6. Discovering riboswitches: the past and the future.Trends in biochemical sciences · 2023
    Review
  7. Article
  8. RNA architecture influences plant biology.Journal of experimental botany · 2021
    Review
  9. Current view and perspectives in viroid replication.Current opinion in virology · 2021
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Ming C HammondDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, USA.
Andreas Wachter
Ronald R Breaker
Yale University · USHeidelberg University · DE

Funding

Natural mRNA Genetic Switches that Bind MetabolitesR01GM068819 · NIGMS · YALE UNIVERSITY · PI BREAKER, RONALD R · 2003 to 2006
$1.3M
Howard Hughes Medical InstituteNIGMS NIH HHS GM068819NIGMS NIH HHS R01 GM068819
6 · The paper itself

Abstract

Transcription factor IIIA (TFIIIA) is required for eukaryotic synthesis of 5S ribosomal RNA by RNA polymerase III. Here we report the discovery of a structured RNA element with clear resemblance to 5S rRNA that is conserved within TFIIIA precursor mRNAs from diverse plant lineages. TFIIIA protein expression is controlled by alternative splicing of the exon containing the plant 5S rRNA mimic (P5SM). P5SM triggers exon skipping upon binding of ribosomal protein L5, a natural partner of 5S rRNA, which demonstrates the functional adaptation of its structural mimicry. As the exon-skipped splice product encodes full-length TFIIIA protein, these results reveal a ribosomal protein-mRNA interaction that is involved in 5S rRNA synthesis and has implications for cross-coordination of ribosomal components. This study also provides insight into the origin and function of a newfound class of structured RNA that regulates alternative splicing.

Indexed as

Molecular MimicryAlternative SplicingBase SequenceConserved SequenceExonsGene Expression Regulation, PlantModels, GeneticMolecular Sequence DataMutagenesis, InsertionalMutationNucleic Acid ConformationPlantsProtein BindingRecombinant Fusion ProteinsRibosomal ProteinsRNA, PlantRecombinant Fusion Proteinsribosomal protein L5Ribosomal ProteinsRNA, PlantRNA PrecursorsRNA, Ribosomal, 5STranscription Factor TFIIIA

Identifiers

PMID19377483
PMCPMC2680232
OpenAlexW2082342350

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.