Evidence map›Paper›PMID 19377082›Full record

ArticleHaematologica2009

Gene expression profiling reveals differences in microenvironment interaction between patients with chronic lymphocytic leukemia expressing high versus low ZAP70 mRNA.

Basile Stamatopoulos, Benjamin Haibe-Kains, Carole Equeter, Nathalie Meuleman, Anne Sorée, Cécile De Bruyn, Delphine Hanosset, Dominique Bron, Philippe Martiat, Laurence Lagneaux

Open access · goldAbstract read
In one paragraph

Article in Haematologica, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

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  17. FcR-like 2 Inhibition of B cell receptor-mediated activation of B cells.Journal of immunology (Baltimore, Md. : 1950) · 2010
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Basile StamatopoulosUniversité Libre de Bruxelles, Institut Jules Bordet, Laboratoire d'Hématologie Expérimentale, Bruxelles, Belgium. bstamato@ulb.ac.be
Benjamin Haibe-Kains
Carole Equeter
Nathalie Meuleman
Anne Sorée
Cécile De Bruyn
Delphine Hanosset
Dominique Bron
Philippe Martiat
Laurence Lagneaux
Institut Jules Bordet · BEUniversité Libre de Bruxelles · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundZeta-associated protein 70 (ZAP70) is a widely recognized prognostic factor in chronic lymphocytic leukemia, but mechanisms by which its higher expression leads to a poor outcome must still be fully explained. DESIGN AND

methodsIn an attempt to unveil unfavorable cellular properties linked to high ZAP70 expression, we used gene expression profiling to identify genes associated with disparities in B cells from chronic lymphocytic leukemia patients expressing high versus low ZAP70 mRNA, measured by quantitative real-time PCR. Two groups of 7 patients were compared, selected on the basis of either high or low ZAP70 mRNA expression.

resultsTwenty-seven genes were differentially expressed with an FDR<10%, and several genes were significant predictors of treatment-free survival (TFS) and/or overall survival; PDE8A and FCRL family genes (down-regulated in ZAP70(+) patients) could predict TFS and overall survival; ITGA4 mRNA (up-regulated in ZAP70(+) patients) could significantly predict overall survival. Importantly, gene set enrichment analysis revealed overrepresentation of adhesion/migration genes. We therefore investigated in vitro adhesion/migration capacity of chronic lymphocytic leukemia cells into a stromal microenvironment or in response to conditioned medium. We showed that ZAP70(+) cells had better adhesion/migration capacities and only ZAP70(+) patient cells responded to microenvironment contact by CXCR4 downregulation.

conclusionsWe concluded that several prognostic factors are the reflection of microenvironment interactions and that the increased adhesion/migratory capacity of ZAP70(+) cells in their microenvironment can explain their better survival and thus the aggressiveness of the disease.

Indexed as

Gene Expression ProfilingAgedAntigens, CDAntigens, Differentiation, T-LymphocyteB-LymphocytesCD69 AntigensCell AdhesionCell MovementCluster AnalysisFemaleFlow CytometryHumansLectins, C-TypeLeukemia, Lymphocytic, Chronic, B-CellMaleMesenchymal Stem CellsAntigens, CDAntigens, Differentiation, T-LymphocyteCD69 AntigensCXCR4 protein, humanLectins, C-TypeReceptors, CXCR4RNA, MessengerZAP70 protein, humanZAP-70 Protein-Tyrosine Kinase

Identifiers

PMID19377082
PMCPMC2688570
OpenAlexW2117811108

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.