Evidence map›Paper›PMID 19376866›Full record

ArticleJournal of bacteriology2009

Functional characterization of excision repair and RecA-dependent recombinational DNA repair in Campylobacter jejuni.

Esther J Gaasbeek, Fimme J van der Wal, Jos P M van Putten, Paulo de Boer, Linda van der Graaf-van Bloois, Albert G de Boer, Bart J Vermaning, Jaap A Wagenaar

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
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  6. Identification of aFrontiers in microbiology · 2019
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  11. Phase-Variable Changes in the Position ofJournal of bacteriology · 2017
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  15. The Minor Flagellin ofFrontiers in microbiology · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Esther J GaasbeekDepartment of Bacteriology and TSEs, Central Veterinary Institute of Wageningen UR, 8219 PH Lelystad, The Netherlands.
Fimme J van der Wal
Jos P M van Putten
Paulo de Boer
Linda van der Graaf-van Bloois
Albert G de Boer
Bart J Vermaning
Jaap A Wagenaar
Wageningen University & Research · NLUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The presence and functionality of DNA repair mechanisms in Campylobacter jejuni are largely unknown. In silico analysis of the complete translated genome of C. jejuni NCTC 11168 suggests the presence of genes involved in methyl-directed mismatch repair (MMR), nucleotide excision repair, base excision repair (BER), and recombinational repair. To assess the functionality of these putative repair mechanisms in C. jejuni, mutS, uvrB, ung, and recA knockout mutants were constructed and analyzed for their ability to repair spontaneous point mutations, UV irradiation-induced DNA damage, and nicked DNA. Inactivation of the different putative DNA repair genes did not alter the spontaneous mutation frequency. Disruption of the UvrB and RecA orthologues, but not the putative MutS or Ung proteins, resulted in a significant reduction in viability after exposure to UV irradiation. Assays performed with uracil-containing plasmid DNA showed that the putative uracil-DNA glycosylase (Ung) protein, important for initiation of the BER pathway, is also functional in C. jejuni. Inactivation of recA also resulted in a loss of natural transformation. Overall, the data indicate that C. jejuni has multiple functional DNA repair systems that may protect against DNA damage and limit the generation of genetic diversity. On the other hand, the apparent absence of a functional MMR pathway may enhance the frequency of on-and-off switching of phase variable genes typical for C. jejuni and may contribute to the genetic heterogeneity of the C. jejuni population.

Indexed as

DNA RepairRecombination, GeneticBacterial ProteinsCampylobacter jejuniDNA DamageDNA Repair EnzymesMicrobial ViabilityMutationRec A RecombinasesUltraviolet RaysBacterial ProteinsDNA Repair EnzymesRec A Recombinases

Identifiers

PMID19376866
PMCPMC2698403
OpenAlexW2163468708

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.