Evidence map›Paper›PMID 19373808›Full record

ArticleElectrophoresis2009

Quantitative proteomics investigation of pancreatic intraepithelial neoplasia.

Sheng Pan, Ru Chen, Beth Ann Reimel, David A Crispin, Hamid Mirzaei, Kelly Cooke, Joshua F Coleman, Zhaoli Lane, Mary P Bronner, David R Goodlett and 4 more

Open access · greenAbstract read
In one paragraph

Article in Electrophoresis, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. The mechanobiome: a goldmine for cancer therapeutics.American journal of physiology. Cell physiology · 2021
    Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Glycoproteins and glycoproteomics in pancreatic cancer.World journal of gastroenterology · 2016
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Proteins associated with pancreatic cancer survival in patients with resectable pancreatic ductal adenocarcinoma.Laboratory investigation; a journal of technical methods and pathology · 2015
    Article
  20. Pancreatic cancer and its stroma: a conspiracy theory.World journal of gastroenterology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 2 countries.

Sheng PanDepartment of Pathology, University of Washington, Seattle, WA 98195, USA.
Ru Chen
Beth Ann Reimel
David A Crispin
Hamid Mirzaei
Kelly Cooke
Joshua F Coleman
Zhaoli Lane
Mary P Bronner
David R Goodlett
Martin W McIntosh
William Traverso
Ruedi Aebersold
Teresa A Brentnall
University of Washington · USCleveland Clinic · USInstitute for Systems Biology · USFred Hutch Cancer Center · USHenry Ford Hospital · USUniversity of Zurich · CHVirginia Mason Medical Center · US

Funding

Pancreatic Cancer Protein Biomarkers for Early DetectionR01CA107209 · NCI · UNIVERSITY OF WASHINGTON · PI BRENTNALL, TERESA A · 2006 to 2010
$2.5M
Protein biomarkers for detection of pancreatic cancerK07CA116296 · NCI · UNIVERSITY OF WASHINGTON · PI CHEN, RU · 2007 to 2011
$650k
NHLBI PROTEOMICS INITIATIVE-268028179N01HV028179 · HV · INSTITUTE FOR SYSTEMS BIOLOGY · 2002 to 2002
–
NCI NIH HHS 1R01CA107209NCI NIH HHS K07 CA116296NCI NIH HHS K07CA116296NCI NIH HHS R01 CA107209NHLBI NIH HHS N01 HV028179NHLBI NIH HHS N0I-HV-28179
6 · The paper itself

Abstract

Patients with pancreatic cancer are usually diagnosed at late stages, when the disease is incurable. Pancreatic intraepithelial neoplasia (PanIN) 3 is believed to be the immediate precursor lesion of pancreatic adenocarcinoma, and would be an ideal stage to diagnose patients, when intervention and cure are possible and patients are curable. In this study, we used quantitative proteomics to identify dysregulated proteins in PanIN 3 lesions. Altogether, over 200 dysregulated proteins were identified in the PanIN 3 tissues, with a minimum of a 1.75-fold change compared with the proteins in normal pancreas. These dysregulated PanIN 3 proteins play roles in cell motility, the inflammatory response, the blood clotting cascade, the cell cycle and its regulation, and protein degradation. Further network analysis of the proteins identified c-MYC as an important regulatory protein in PanIN 3 lesions. Finally, three of the overexpressed proteins, laminin beta-1, galectin-1, and actinin-4 were validated by immunohistochemistry analysis. All three of these proteins were overexpressed in the stroma or ductal epithelial cells of advanced PanIN lesions as well as in pancreatic cancer tissue. Our findings suggest that these three proteins may be useful as biomarkers for advanced PanIN and pancreatic cancer if further validated. The dysregulated proteins identified in this study may assist in the selection of candidates for future development of biomarkers for detecting early and curable pancreatic neoplasia.

Indexed as

Gene Expression Regulation, NeoplasticAdenocarcinomaHumansImmunohistochemistryMass SpectrometryPancreatic NeoplasmsProteomeProteome

Identifiers

PMID19373808
PMCPMC2775073
OpenAlexW2038463702

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.