Evidence map›Paper›PMID 19373490›Full record

ArticleHuman genetics2009

Association of three-gene interaction among MTHFR, ALOX5AP and NOTCH3 with thrombotic stroke: a multicenter case-control study.

Junhao Liu, Kai Sun, Yongyi Bai, Weili Zhang, Xiaojian Wang, Yibo Wang, Hu Wang, Jingzhou Chen, Xiaodong Song, Ying Xin and 2 more

Abstract readComparative StudyMulticenter Study
PubMed Publisher
In one paragraph

Article in Human genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 2 pooled it
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 2 syntheses or guidelines pooled it, 39 citations in OpenAlex.

  1. Association ofMedicina (Kaunas, Lithuania) · 2019
    Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. A Patient with Combined CADASIL and MTHFR Homozygosity.Case reports in neurological medicine · 2020
    Article
  6. The Role of Polymorphism GenOpen access Macedonian journal of medical sciences · 2019
    Article
  7. Article
  8. Article
  9. Review
  10. Association ofExperimental and therapeutic medicine · 2016
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Assessing gene-gene interactions in pharmacogenomics.Molecular diagnosis & therapy · 2012
    Review
  16. Association of ALOX5AP with ischemic stroke in eastern Chinese.World journal of emergency medicine · 2012
    Article
  17. Variants in the inflammatory IL6 and MPO genes modulate stroke susceptibility through main effects and gene-gene interactions.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2011
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Junhao LiuSino-German Laboratory, Molecular Medicine, Key Laboratory for Clinical Cardiovascular Genetics of Ministry of Education, FuWai Hospital, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, China. ljh.bb.bj@gmail.com
Kai Sun
Yongyi Bai
Weili Zhang
Xiaojian Wang
Yibo Wang
Hu Wang
Jingzhou Chen
Xiaodong Song
Ying Xin
Zhe Liu
Rutai Hui
Fu Wai Hospital · CNAcademy of Medical Sciences · GBChinese Academy of Medical Sciences & Peking Union Medical College · CNPeking Union Medical College Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stroke is a common complex trait and does not follow Mendelian pattern of inheritance. Gene-gene or gene-environment interactions may be responsible for the complex trait. How the interactions contribute to stroke is still under research. This study aimed to explore the association between gene-gene interactions and stroke in Chinese in a large case-control study. Nearly 4,000 participants were recruited from seven clinical centers. Eight variants in five candidate genes were examined for stroke risk. Gene-gene interactions were explored by using Generalized Multifactor Dimensionality Reduction (GMDR). A significant gene-gene interaction was found by GMDR. The best model including MTHFR C677T, ALOX5AP T2354A and NOTCH3 C381T scored 10 for Cross-Validation Consistency and 9 for Sign Test (P = 0.0107). The individuals with combination of MTHFR 677TT, ALOX5AP 2354AA and NOTCH3 381TT/TC had a significantly higher risk of thrombotic stroke (OR 3.165, 95% CI 1.461-6.858, P = 0.003). Our results show that combination of these alleles conferred higher risk for stroke than single risk allele. The gene-gene interaction may serve as a novel area for stroke research. The three-locus combination may change the susceptibility of particular subjects to the disease.

Indexed as

5-Lipoxygenase-Activating ProteinsAgedAllelesAsian PeopleCarrier ProteinsCase-Control StudiesDNA Mutational AnalysisFemaleGene FrequencyGenetic Predisposition to DiseaseGenotypeHumansIntracranial ThrombosisLogistic ModelsMaleMembrane Proteins5-Lipoxygenase-Activating ProteinsALOX5AP protein, humanCarrier ProteinsMembrane ProteinsMethylenetetrahydrofolate Reductase (NADPH2)NOTCH3 protein, humanReceptor, Notch3Receptors, Notch

Identifiers

PMID19373490
OpenAlexW2035907279

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.