Evidence map›Paper›PMID 19372275›Full record

ArticleNucleic acids research2009

The C. elegans Snail homolog CES-1 can activate gene expression in vivo and share targets with bHLH transcription factors.

John S Reece-Hoyes, Bart Deplancke, M Inmaculada Barrasa, Julia Hatzold, Ryan B Smit, H Efsun Arda, Patricia A Pope, Jeb Gaudet, Barbara Conradt, Albertha J M Walhout

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 42 citations in OpenAlex.

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  4. A coherent FOXO3-SNAI2 feed-forward loop in autophagy.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  8. Genetics · 2017
    Article
  9. Gene-Centered Yeast One-Hybrid Assays.Cold Spring Harbor protocols · 2016
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Transcriptional regulation of gene expression in C. elegans.WormBook : the online review of C. elegans biology · 2013
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

John S Reece-HoyesProgram in Gene Function and Expression, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Bart Deplancke
M Inmaculada Barrasa
Julia Hatzold
Ryan B Smit
H Efsun Arda
Patricia A Pope
Jeb Gaudet
Barbara Conradt
Albertha J M Walhout
University of Massachusetts Chan Medical School · USUniversity of Calgary · CAHealth Sciences Centre · CA

Funding

Transcription networks in C elegans organogenesisR01DK068429 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI A. J. Marian Walhout · 2005 to 2026
$10.9M
Identifying transcription factor binding sites in the C. elegans genomeR01GM082971 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WALHOUT, A. J. MARIAN · 2008 to 2016
$5.8M
Analysis of Cell Death Regulation in C.elegansR01GM069950 · NIGMS · LUDWIG MAXIMILIAN UNIVERSITY · PI CONRADT, BARBARA · 2004 to 2012
$2.7M
Mapping worm fat gene networksR21DK071713 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WALHOUT, ALBERTHA JOHANNA · 2005 to 2006
$441k
NIDDK NIH HHS R01DK068429NIDDK NIH HHS R21DK071713NIGMS NIH HHS R01GM069950NIGMS NIH HHS R01GM082971
6 · The paper itself

Abstract

Snail-type transcription factors (TFs) are found in numerous metazoan organisms and function in a plethora of cellular and developmental processes including mesoderm and neuronal development, apoptosis and cancer. So far, Snail-type TFs are exclusively known as transcriptional repressors. They repress gene expression by recruiting transcriptional co-repressors and/or by preventing DNA binding of activators from the basic helix-loop-helix (bHLH) family of TFs to CAGGTG E-box sequences. Here we report that the Caenorhabditis elegans Snail-type TF CES-1 can activate transcription in vivo. Moreover, we provide results that suggest that CES-1 can share its binding site with bHLH TFs, in different tissues, rather than only occluding bHLH DNA binding. Together, our data indicate that there are at least two types of CES-1 target genes and, therefore, that the molecular function of Snail-type TFs is more plastic than previously appreciated.

Indexed as

Transcriptional ActivationAnimalsBasic Helix-Loop-Helix ProteinsBinding SitesCaenorhabditis elegansCaenorhabditis elegans ProteinsDNA-Binding ProteinsPharynxPromoter Regions, GeneticRegulatory Elements, TranscriptionalTranscription FactorsBasic Helix-Loop-Helix ProteinsCaenorhabditis elegans Proteinsces-1 protein, C elegansDNA-Binding ProteinsHLH-6 protein, C elegansTranscription Factors

Identifiers

PMID19372275
PMCPMC2699517
OpenAlexW1965105878

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.