Evidence map›Paper›PMID 19372255›Full record

ArticleBlood2009

Loss of heterozygosity 4q24 and TET2 mutations associated with myelodysplastic/myeloproliferative neoplasms.

Anna M Jankowska, Hadrian Szpurka, Ramon V Tiu, Hideki Makishima, Manuel Afable, Jungwon Huh, Christine L O'Keefe, Rebecca Ganetzky, Michael A McDevitt, Jaroslaw P Maciejewski

Open access · greenAbstract readComparative Study
In one paragraph

Article in Blood, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 191 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
191citing papers in PubMed, 1 pooled it
23.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

191 citing papers in PubMed, 1 synthesis or guideline pooled it, 375 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. TET2 mutations improve the new European LeukemiaNet risk classification of acute myeloid leukemia: a Cancer and Leukemia Group B study.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2011
    Trial
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  8. Article
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  12. RNA mNature · 2024
    Article
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  14. Lower Levels of TET2 Gene Expression, with a Higher Level of TET2 Promoter Methylation in Patients with AML; Evidence for the Role of Aberrant Methylation in AML Pathogenesis.Indian journal of hematology & blood transfusion : an official journal of Indian Society of Hematology and Blood Transfusion · 2024
    Article
  15. Review
  16. Distinct and opposite effects of leukemogenicProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  20. Review

131 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Anna M JankowskaDepartment of Translational Hematology and Oncology Research, Taussig Cancer Institute, Cleveland Clinic, OH 44195, USA.
Hadrian Szpurka
Ramon V Tiu
Hideki Makishima
Manuel Afable
Jungwon Huh
Christine L O'Keefe
Rebecca Ganetzky
Michael A McDevitt
Jaroslaw P Maciejewski
Cancer Institute (WIA) · INCleveland Clinic · USJohns Hopkins University · US

Funding

Predisposition to chromosomal alterations in MDSR01HL082983 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI MACIEJEWSKI, JAROSLAW P. · 2005 to 2008
$1.5M
Training/Research Center-Bone Marrow Failure SyndromesK24HL077522 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI MACIEJEWSKI, JAROSLAW P. · 2005 to 2014
$1.2M
LASER SCANNING CONFOCAL MICROSCOPE: NEUROSCIENCES10RR019391 · NCRR · UNIVERSITY OF LOUISVILLE · PI EPSTEIN, PAUL N. · 2004 to 2004
$315k
NCRR NIH HHS S10 RR019391NCRR NIH HHS U54 RR019391NHLBI NIH HHS K24 HL-077522NHLBI NIH HHS K24 HL077522NHLBI NIH HHS R01 HL082983NHLBI NIH HHS R01HL-082983
6 · The paper itself

Abstract

Chromosomal abnormalities are frequent in myeloid malignancies, but in most cases of myelodysplasia (MDS) and myeloproliferative neoplasms (MPN), underlying pathogenic molecular lesions are unknown. We identified recurrent areas of somatic copy number-neutral loss of heterozygosity (LOH) and deletions of chromosome 4q24 in a large cohort of patients with myeloid malignancies including MDS and related mixed MDS/MPN syndromes using single nucleotide polymorphism arrays. We then investigated genes in the commonly affected area for mutations. When we sequenced TET2, we found homozygous and hemizygous mutations. Heterozygous and compound heterozygous mutations were found in patients with similar clinical phenotypes without LOH4q24. Clinical analysis showed most TET2 mutations were present in patients with MDS/MPN (58%), including CMML (6/17) or sAML (32%) evolved from MDS/MPN and typical MDS (10%), suggesting they may play a ubiquitous role in malignant evolution. TET2 mutations affected conserved domains and the N terminus. TET2 is widely expressed in hematopoietic cells but its function is unknown, and it lacks homology to other known genes. The frequency of mutations in this candidate myeloid regulatory gene suggests an important role in the pathogenesis of poor prognosis MDS/MPN and sAML and may act as a disease gene marker for these often cytogenetically normal disorders.

Indexed as

Loss of HeterozygosityAcute DiseaseAdultAmino Acid SequenceChromosomes, Human, Pair 4Cohort StudiesConserved SequenceDioxygenasesDisease ProgressionDNA-Binding ProteinsDNA Mutational AnalysisDNA, NeoplasmGenotypeHumansJanus Kinase 2Kaplan-Meier EstimateDioxygenasesDNA-Binding ProteinsDNA, NeoplasmJanus Kinase 2Neoplasm ProteinsProto-Oncogene ProteinsTET2 protein, human

Identifiers

PMID19372255
PMCPMC2710933
OpenAlexW2082312262

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.