Evidence map›Paper›PMID 19370321›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2009

Mutations of the multi-drug resistance-associated protein ABC transporter gene 5 result in reduction of phytic acid in rice seeds.

Xiu-Hong Xu, Hai-Jun Zhao, Qing-Long Liu, Thomas Frank, Karl-Heinz Engel, Gynheung An, Qing-Yao Shu

Abstract read
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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
8.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 95 citations in OpenAlex.

  1. Article
  2. Identification of a novel mutation in theFrontiers in plant science · 2024
    Article
  3. Review
  4. Genetic Localization and Homologous Genes Mining for Barley Grain Size.International journal of molecular sciences · 2023
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Globoids and Phytase: The Mineral Storage and Release System in Seeds.International journal of molecular sciences · 2020
    Review
  10. Article
  11. Article
  12. Phytic Acid and Transporters: What Can We Learn fromPlants (Basel, Switzerland) · 2020
    Review
  13. Article
  14. MRP Transporters andFrontiers in plant science · 2020
    Review
  15. Knockout ofFrontiers in plant science · 2020
    Article
  16. Mutation ofPlants (Basel, Switzerland) · 2019
    Article
  17. Article
  18. Article
  19. Molecular modeling and3 Biotech · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 4 countries.

Xiu-Hong XuIAEA-Zhejiang University Collaborating Center, and National Key Laboratory of Rice Biology, Institute of Nuclear Agricultural Sciences, Zhejiang University, Hangzhou, China.
Hai-Jun Zhao
Qing-Long Liu
Thomas Frank
Karl-Heinz Engel
Gynheung An
Qing-Yao Shu
China National Rice Research Institute · CNTechnical University of Munich · DEPohang University of Science and Technology · KRZheJiang Academy of Agricultural Sciences · CNZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phytic acid (PA, myo-inositol 1,2,3,4,5,6-hexakisphosphate) is important to the nutritional quality of cereal and legume seeds. PA and its salts with micronutrient cations, such as iron and zinc, cannot be digested by humans and non-ruminant animals, and hence may affect food/feed nutritional value and cause P pollution of groundwater from animal waste. We previously developed a set of low phytic acid (LPA) rice mutant lines with the aim of increasing the nutritional quality of rice. Two of these lines, Os-lpa-XS110-2 (homozygous non-lethal) Os-lpa-XS110-3 (homozygous lethal), contain two mutant alleles of a LPA gene (hereafter XS-lpa2-1 and XS-lpa2-2, respectively). In this study, we mapped the XS-lpa2-1 gene to a region on chromosome 3 between microsatellite markers RM14360 and RM1332, where the rice orthologue (OsMRP5) of the maize lpa1 gene is located. Sequence analysis of the OsMRP5 gene revealed a single base pair change (C/G-T/A transition) in the sixth exon of XS-lpa2-1 and a 5-bp deletion in the first exon of XS-lpa2-2. OsMRP5 is expressed in both vegetative tissues and developing seeds, and the two mutations do not change the level of RNA transcription. A T-DNA insertion line, 4A-02500, in which OsMRP5 was disrupted, also showed the same high inorganic phosphorus phenotype as Os-lpa-XS110-3 and appeared to be homozygous lethal. PA is significantly reduced in Os-lpa-XS110-2 (~20%) and in 4A-02500 (~90%) seeds compared with their wild type lines, and no PA was detected in Os-lpa-XS110-3 using HPLC analysis. This evidence indicates that the OsMRP5 gene plays an important role in PA metabolism in rice seeds.

Indexed as

Genes, PlantMutationAnimalsATP-Binding Cassette, Sub-Family C ProteinsChromosome MappingDNA, BacterialDrug Resistance, MultipleGene Expression Regulation, PlantGene Knockout TechniquesHumansOryzaPhenotypePhytic AcidPlant ProteinsSeedsATP-Binding Cassette, Sub-Family C ProteinsDNA, BacterialPhytic AcidPlant ProteinsT-DNA

Identifiers

PMID19370321
OpenAlexW2058157513

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.