Evidence map›Paper›PMID 19369341›Full record

ArticleJournal of virology2009

Human immunodeficiency virus integration efficiency and site selection in quiescent CD4+ T cells.

Dimitrios N Vatakis, Sanggu Kim, Namshin Kim, Samson A Chow, Jerome A Zack

Abstract readComparative Study
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Modeling HIV-1 Latency Using Primary CD4Journal of virology · 2019
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. The effects of cocaine on HIV transcription.Journal of neurovirology · 2016
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Dimitrios N VatakisDepartment of Medicine, Division of Hematology-Oncology, UCLA AIDS Institute, UCLA School of Medicine, Los Angeles, California 90095, USA.
Sanggu Kim
Namshin Kim
Samson A Chow
Jerome A Zack

Funding

Virology CoreP30AI028697 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ANTON, PETER A · 1991 to 2018
$39.9M
Targeting HIV Reservoirs in vitro and in vivoR01AI070010 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZACK, JEROME A. · 2006 to 2014
$3.7M
IN VIVO PATHOGENESIS OF HIV1R37AI036059 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZACK, JEROME A. · 1998 to 2007
$2.8M
MOLECULAR MECHANISMS OF HIV1 DNA INTEGRATIONR01CA068859 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHOW, SAMSON A · 1995 to 2008
$2.5M
IN VIVO PATHOGENESIS OF HIV-1R01AI036059 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZACK, JEROME A. · 1994 to 1997
–
NCI NIH HHS CA68859NCI NIH HHS R01 CA068859NIAID NIH HHS AI03059NIAID NIH HHS AI070010NIAID NIH HHS AI28697NIAID NIH HHS AI36059NIAID NIH HHS P30 AI028697NIAID NIH HHS R01 AI070010NIAID NIH HHS R37 AI036059
6 · The paper itself

Abstract

Until very recently, quiescent CD4(+) T cells were thought to be resistant to human immunodeficiency virus (HIV) infection. Subsequent studies, attempting to fully elucidate the mechanisms of resistance, showed that quiescent cells could become infected by HIV at low efficiency and form a latently infected population. In this study, we set out to identify the sites of viral integration and to assess the efficiency of the overall integration process in quiescent cells. Based on our results, HIV integration in quiescent CD4(+) T cells occurs in sites similar to those of their prestimulated counterparts. While site selections are similar, the integration process in quiescent cells is plagued by the formation of high levels of incorrectly processed viral ends and abortive two-long-terminal-repeat circles.

Indexed as

Virus IntegrationCD4-Positive T-LymphocytesCell LineChromosome MappingDNA, ViralHIVHIV InfectionsHIV Long Terminal RepeatHumansLymphocyte ActivationSequence Analysis, DNADNA, Viral

Identifiers

PMID19369341
PMCPMC2687367

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.