Evidence map›Paper›PMID 19368883›Full record

ArticleStructure (London, England : 1993)2009

Synergy of NMR, computation, and X-ray crystallography for structural biology.

Blair R Szymczyna, Rebecca E Taurog, Mark J Young, Jamie C Snyder, John E Johnson, James R Williamson

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Article
  3. Organic-solvent mediated self-assembly of protoporphyrin IX with human serum albumin.International journal of biological macromolecules · 2025
    Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Article
  10. Article
  11. Structural studies ofProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. Review
  13. The enigmatic archaeal virosphere.Nature reviews. Microbiology · 2017
    Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Archaeal extrachromosomal genetic elements.Microbiology and molecular biology reviews : MMBR · 2015
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Blair R SzymczynaDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA.
Rebecca E Taurog
Mark J Young
Jamie C Snyder
John E Johnson
James R Williamson
Scripps Research Institute · USMontana State University · US

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
Studies of large and small-scale virus capsid dynamicsR01GM054076 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI JOHNSON, JOHN EMIL · 1995 to 2014
$6.2M
NMR STUDIES OF THE HIV REV PEPITDE-RRE COMPLEXR01GM053320 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WILLIAMSON, JAMES R · 1995 to 2010
$4.9M
Biochemical and structural characterization of self-assembling viral particlesF32GM084476 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI TAUROG, REBECCA ETHEL · 2007 to 2010
$148k
NIGMS NIH HHS F32 GM084476NIGMS NIH HHS GM-054076NIGMS NIH HHS GM-082545NIGMS NIH HHS GM-084476-01NIGMS NIH HHS P50 GM082545NIGMS NIH HHS R01 GM053320NIGMS NIH HHS R01 GM054076
6 · The paper itself

Abstract

NMR spectroscopy and X-ray crystallography are currently the two most widely applied methods for the determination of macromolecular structures at high resolution. More recently, significant advances have been made in algorithms for the de novo prediction of protein structure, and, in favorable cases, the predicted models agree extremely well with experimentally determined structures. Here, we demonstrate a synergistic combination of NMR spectroscopy, de novo structure prediction, and X-ray crystallography in an effective overall strategy for rapidly determining the structure of the coat protein C-terminal domain from the Sulfolobus islandicus rod-shaped virus (SIRV). This approach takes advantage of the most accessible aspects of each structural technique and may be widely applicable for structure determination.

Indexed as

AlgorithmsAmino Acid SequenceBinding SitesCapsid ProteinsComputational BiologyCrystallography, X-RayModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryReproducibility of ResultsRudiviridaeSequence Homology, Amino AcidSulfolobusCapsid ProteinsViral Proteins

Identifiers

PMID19368883
PMCPMC2705668
OpenAlexW2010632792

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.