Evidence map›Paper›PMID 19368335›Full record

ArticleBiochemistry2009

Factors controlling the reactivity of hydrogen sulfide with hemeproteins.

Ruth Pietri, Ariel Lewis, Ruth G León, Gullermina Casabona, Laurent Kiger, Syun-Ru Yeh, Sebastian Fernandez-Alberti, Michael C Marden, Carmen L Cadilla, Juan López-Garriga

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 112 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. C-H⋯S hydrogen bonding interactions.Chemical Society reviews · 2022
    Review
  8. Article
  9. Regulation of the redox metabolome and thiol proteome by hydrogen sulfide.Critical reviews in biochemistry and molecular biology · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Chemical Biology of HChemical reviews · 2018
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Ruth PietriDepartment of Chemistry, University of Puerto Rico, Mayaguez Campus, P.O. Box 9019, Mayaguez, Puerto Rico 00681-9019.
Ariel Lewis
Ruth G León
Gullermina Casabona
Laurent Kiger
Syun-Ru Yeh
Sebastian Fernandez-Alberti
Michael C Marden
Carmen L Cadilla
Juan López-Garriga
Albert Einstein College of Medicine · USNational University of Quilmes · ARUniversity of Puerto Rico-Mayaguez · PRUniversity of Puerto Rico, Medical Sciences Campus · PRInserm · FRUniversité Paris Cité · FR

Funding

SUPPLEMENT FOR RENOVATION OF ANIMAL FACILITIES AT INSTITUTE OF NEUROBIOLOGYG12RR003051 · NCRR · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI ESPINO, ANA M · 1986 to 2011
$28.1M
TRANSLATIONAL PROTEOMICS CENTERG12MD007600 · NIMHD · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI FERNANDEZ-REPOLLET, EMMA · 2012 to 2016
$11.0M
Unraveling the Reaction between Heme (FeIV=O) Moiety and H2SS06GM008103 · NIGMS · UNIVERSITY OF PUERTO RICO MAYAGUEZ · PI SUNDARAM, PAUL A. · 1989 to 2010
$10.6M
UPR COBRE: PROTEIN STRUCTURE FUNCTION &DYNAMICS: ADMINISTRATIVE COREP20RR016439 · NCRR · UNIVERSITY OF PUERTO RICO MAYAGUEZ · PI PASTRANA-RIOS, BELINDA · 2001 to 2005
$7.3M
UPR-MHIRT in Infectious Disease and Molecular BiologyT37MD001477 · NIMHD · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI HILLYER, GEORGE V · 2005 to 2008
$454k
NCRR NIH HHS G12 RR003051NCRR NIH HHS G12RR03051NCRR NIH HHS P20 RR016439NCRR NIH HHS P20RR016439NIGMS NIH HHS S06 GM008103NIGMS NIH HHS S06GM08103-34NIMHD NIH HHS G12 MD007600NIMHD NIH HHS T37 MD001477NIMHD NIH HHS T37MD001477
6 · The paper itself

Abstract

Hemoglobin I (HbI) from the clam Lucina pectinata is an intriguing hemeprotein that binds and transports H(2)S to sulfide-oxidizing chemoautotrophic bacteria to maintain a symbiotic relationship and to protect the mollusk from H(2)S toxicity. Single point mutations at E7, B10, and E11 were introduced into the HbI heme pocket to define the reactivity of sulfide with hemeproteins. The functional and structural properties of mutant and wild-type recombinant proteins were first evaluated using the well-known ferrous CO and O(2) derivatives. The effects of these mutations on the ferric environment were then studied in the metaquo and hydrogen sulfide derivatives. The results obtained with the ferrous HbI mutants show that all the E7 substitutions and the PheB10Tyr mutation influence directly CO and O(2) binding and stability while the B10 and E11 substitutions induce distal structural rearrangements that affect ligand entry and escape indirectly. For the metaquo-GlnE7His, -PheB10Val, -PheB10Leu, and -E11 variants, two individual distal structures are suggested, one of which is associated with H-bonding interactions between the E7 residues and the bound water. Similar H-bonding interactions are invoked for these HbI-H(2)S mutant derivatives and the rHbI, altering in turn sulfide reactivity within these protein samples. This is evident in the resonance Raman spectra of these HbI-H(2)S complexes, which show reduction of heme iron as judged by the appearance of the nu(4) oxidation state marker at 1356 cm(-1), indicative of heme-Fe(II) species. This reduction process depends strongly on distal mutations showing faster reduction for those HbI mutants exhibiting the strongest H-bonding interactions. Overall, the results presented here show that (a) H(2)S association is regulated by external kinetic barriers, (b) H(2)S release is controlled by two competing reactions involving simple sulfide dissociation and heme reduction, (c) at high H(2)S concentrations, reduction of the ferric center dominates, and (d) reduction of the heme is also enhanced in those HbI mutants having polar distal environments.

Indexed as

Amino Acid SubstitutionAnimalsBinding, CompetitiveBivalviaDose-Response Relationship, DrugElectron TransportFerrous CompoundsHemeHemeproteinsHemoglobinsHydrogen SulfideProtein BindingSpectrum Analysis, RamanStereoisomerismStructure-Activity RelationshipFerrous CompoundsHemeHemeproteinshemoglobin I, non-mammalianHemoglobinsHydrogen Sulfide

Identifiers

PMID19368335
PMCPMC2715280
OpenAlexW2033225711

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.