Evidence map›Paper›PMID 19366812›Full record

ArticleThe Journal of heredity

Hermes transposon distribution and structure in Musca domestica.

Ramanand A Subramanian, Laura A Cathcart, Elliot S Krafsur, Peter W Atkinson, David A O'Brochta

Abstract read
In one paragraph

Article in The Journal of heredity. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Transposable elements and xenobiotic resistance.Frontiers in insect science · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ramanand A SubramanianCenter for Biosystems Research, University of Maryland Biotechnology Institute, Rockville, MD 20850, USA.
Laura A Cathcart
Elliot S Krafsur
Peter W Atkinson
David A O'Brochta

Funding

HOBO-LIKE TRANSPOSABLE ELEMENTS IN INSECTSR01GM048102 · NIGMS · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI O'BROCHTA, DAVID A · 1992 to 2008
$2.8M
NIGMS NIH HHS GM48102
6 · The paper itself

Abstract

Hermes are hAT transposons from Musca domestica that are very closely related to the hobo transposons from Drosophila melanogaster and are useful as gene vectors in a wide variety of organisms including insects, planaria, and yeast. hobo elements show distinct length variations in a rapidly evolving region of the transposase-coding region as a result of expansions and contractions of a simple repeat sequence encoding 3 amino acids threonine, proline, and glutamic acid (TPE). These variations in length may influence the function of the protein and the movement of hobo transposons in natural populations. Here, we determine the distribution of Hermes in populations of M. domestica as well as whether Hermes transposase has undergone similar sequence expansions and contractions during its evolution in this species. Hermes transposons were found in all M. domestica individuals sampled from 14 populations collected from 4 continents. All individuals with Hermes transposons had evidence for the presence of intact transposase open reading frames, and little sequence variation was observed among Hermes elements. A systematic analysis of the TPE-homologous region of the Hermes transposase-coding region revealed no evidence for length variation. The simple sequence repeat found in hobo elements is a feature of this transposon that evolved since the divergence of hobo and Hermes.

Indexed as

DNA Transposable ElementsAmino Acid SequenceAnimalsDNAGenes, InsectHousefliesMolecular Sequence DataTransposasesDNADNA Transposable ElementsTransposases

Identifiers

PMID19366812
PMCPMC2877534

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.