Evidence map›Paper›PMID 19364820›Full record

ArticleMolecular and cellular biology2009

Spatially restricted translation of the xCR1 mRNA in Xenopus embryos.

Yan Zhang, Kara D Forinash, Jered McGivern, Brian Fritz, Karel Dorey, Michael D Sheets

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Bicaudal-C Post-transcriptional regulator of cell fates and functions.Frontiers in cell and developmental biology · 2022
    Review
  3. Article
  4. Article
  5. Assaying NanoLuc Luciferase Activity from mRNA-Injected Xenopus Embryos.Methods in molecular biology (Clifton, N.J.) · 2019
    Article
  6. Review
  7. Review
  8. Article
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  11. Article
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  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Yan ZhangUniversity of Wisconsin-Madison, Department of Biomolecular Chemistry, 1300 University Avenue, Madison, WI 53706, USA.
Kara D Forinash
Jered McGivern
Brian Fritz
Karel Dorey
Michael D Sheets
University of Wisconsin–Madison · USUniversity of Manchester · GB

Funding

Control of Spemann's organizerR01HD043996 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI SHEETS, MICHAEL D · 2003 to 2007
$1.3M
NICHD NIH HHS HD43996NICHD NIH HHS R01 HD043996
6 · The paper itself

Abstract

The xCR1 protein is a maternal determinant and cofactor for nodal signaling in vertebrate embryos. The xCR1 protein accumulates specifically in the animal cells of Xenopus embryos, but maternal xCR1 mRNA is distributed equally throughout all embryonic cells. Here, we show that vegetal cell-specific translational repression of xCR1 mRNA contributes to this spatially restricted accumulation of the xCR1 protein in Xenopus embryos. xCR1 mRNA was associated with polyribosomes in animal cells but not vegetal cells. A 351-nucleotide region of xCR1 mRNA's 3' untranslated region was sufficient to confer a spatially restricted pattern of translation to a luciferase reporter mRNA by repressing translation in vegetal cells. Repression depended upon the mRNA's 5' cap but not its 3' poly(A) tail. Furthermore, the region of xCR1 mRNA sufficient to confer vegetal cell-specific repression contained both Pumilio binding elements (PBEs) and binding sites for the CUG-BP1 protein. The PBEs and the CUG-BP1 sites were necessary but not sufficient for translation repression. Our studies of xCR1 mRNA document the first example of spatially regulated translation in controlling the asymmetric distribution of a maternal determinant in vertebrates.

Indexed as

Gene Expression Regulation, DevelopmentalProtein Biosynthesis3' Untranslated RegionsAnimalsBase SequenceCell PolarityGenes, ReporterMembrane ProteinsMolecular Sequence DataOocytesPoly APolyribosomesRNA-Binding ProteinsRNA CapsRNA, MessengerXenopus laevis3' Untranslated RegionsMembrane ProteinsPoly APUM1 protein, XenopusRNA-Binding ProteinsRNA CapsRNA, Messengertdgf1.3 protein, XenopusXenopus Proteins

Identifiers

PMID19364820
PMCPMC2698763
OpenAlexW2122177832

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.