Evidence map›Paper›PMID 19364810›Full record

ArticleNucleic acids research2009

Targeted correction of a thalassemia-associated beta-globin mutation induced by pseudo-complementary peptide nucleic acids.

Pallavi Lonkar, Ki-Hyun Kim, Jean Y Kuan, Joanna Y Chin, Faye A Rogers, Melissa P Knauert, Ryszard Kole, Peter E Nielsen, Peter M Glazer

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 52 citations in OpenAlex.

  1. Systemic in utero gene editing as a treatment for cystic fibrosis.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  4. Article
  5. Article
  6. Review
  7. Article
  8. Applications of PNA-laden nanoparticles for hematological disorders.Cellular and molecular life sciences : CMLS · 2019
    Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Targeted genome modification via triple helix formation.Methods in molecular biology (Clifton, N.J.) · 2014
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Pallavi LonkarDepartment of Therapeutic Radiology, Yale University School of Medicine, P.O. Box 208040, New Haven, CT 06520-8040, USA.
Ki-Hyun Kim
Jean Y Kuan
Joanna Y Chin
Faye A Rogers
Melissa P Knauert
Ryszard Kole
Peter E Nielsen
Peter M Glazer
Yale University · USUniversity of North Carolina at Chapel Hill · USUniversity of Copenhagen · DK

Funding

TARGETED MUTAGENESIS OF DNA VIA TRIPLE HELIX FORMATIONR01CA064186 · NCI · YALE UNIVERSITY · PI GLAZER, PETER M · 1995 to 2008
$2.6M
Targeted Correction of the Human Beta-globin GeneR01HL082655 · NHLBI · YALE UNIVERSITY · PI GLAZER, PETER M · 2007 to 2010
$1.6M
NCI NIH HHS R01 CA064186NCI NIH HHS R01CA64186NHLBI NIH HHS R01 HL082655NHLBI NIH HHS R01HL082655
6 · The paper itself

Abstract

Beta-thalassemia is a genetic disorder caused by mutations in the beta-globin gene. Triplex-forming oligonucleotides and triplex-forming peptide nucleic acids (PNAs) have been shown to stimulate recombination in mammalian cells via site-specific binding and creation of altered helical structures that provoke DNA repair. However, the use of these molecules for gene targeting requires homopurine tracts to facilitate triple helix formation. Alternatively, to achieve binding to mixed-sequence target sites for the induced gene correction, we have used pseudo-complementary PNAs (pcPNAs). Due to steric hindrance, pcPNAs are unable to form pcPNA-pcPNA duplexes but can bind to complementary DNA sequences via double duplex-invasion complexes. We demonstrate here that pcPNAs, when co-transfected with donor DNA fragments, can promote single base pair modification at the start of the second intron of the beta-globin gene. This was detected by the restoration of proper splicing of transcripts produced from a green fluorescent protein-beta globin fusion gene. We also demonstrate that pcPNAs are effective in stimulating recombination in human fibroblast cells in a manner dependent on the nucleotide excision repair factor, XPA. These results suggest that pcPNAs can be effective tools to induce heritable, site-specific modification of disease-related genes in human cells without purine sequence restriction.

Indexed as

MutationAnimalsbeta-GlobinsCell LineCHO CellsCricetinaeCricetulusGene TargetingHumansPeptide Nucleic AcidsPlasmidsRecombination, GeneticS PhaseThalassemiaXeroderma Pigmentosum Group A Proteinbeta-GlobinsPeptide Nucleic AcidsXeroderma Pigmentosum Group A Protein

Identifiers

PMID19364810
PMCPMC2699504
OpenAlexW2034423099

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.