ArticlePlanta2009
Genome-wide identification of BURP domain-containing genes in rice reveals a gene family with diverse structures and responses to abiotic stresses.
Article in Planta, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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44 citing papers in PubMed, 100 citations in OpenAlex.
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- Delving into the BURP Super family: A Comprehensive QTL-Assisted Study on RD22 genes and its Role in Salinity Stress Tolerance in Chickpea.Biochemical genetics · 2025Article
- A Comprehensive Analysis of Short Specific Tissue (SST) Proteins, a New Group of Proteins from PF10950 That May Give Rise to Cyclopeptide Alkaloids.Plants (Basel, Switzerland) · 2025Article
- Comparison of Transcriptome Differences between Two Rice Cultivars Differing in Cadmium Translocation from Spike-Neck to Grain.International journal of molecular sciences · 2024Article
- Unraveling the Role of AtSRT2 in Energy Metabolism, Stress Responses, and Gene Expression during Osmotic Stress inPlants (Basel, Switzerland) · 2024Article
- Early transcriptomic responses of rice leaves to herbivory by Spodoptera frugiperda.Scientific reports · 2024Article
- Independent genetic factors control floret number and spikelet number inFrontiers in plant science · 2024Article
- Analysis of quantitative trait loci and candidate gene exploration associated with cold tolerance in rice (Frontiers in plant science · 2024Article
- Genome-wide identification and expression analysis of the BURP domain-containing genes inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- Integrated metabolomics and transcriptomics analysis during seed germination of waxy corn under low temperature stress.BMC plant biology · 2023Article
- Network interactions with functional roles and evolutionary relationships for BURP domain-containing proteins in chickpea and model species.Bioinformation · 2023Article
- Bioinformatics Analysis ofGenes · 2022Article
- Identification and expression analysis of BURP domain-containing genes in jujube and their involvement in low temperature and drought response.BMC genomics · 2022Article
- Meta-Analysis of RNA Sequencing Data of Arabidopsis and Rice under Hypoxia.Life (Basel, Switzerland) · 2022Article
- Genome-wide analysis of BURP genes and identification of a BURP-V gene RcBURP4 in Rosa chinensis.Plant cell reports · 2022Article
- Genomics and transcriptomics to protect rice (Frontiers in plant science · 2022Review
- OverexpressingFrontiers in plant science · 2022Article
- Genome-wide identification of the BURP domain-containing genes inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Slower development of lower canopy beans produces better coffee.Journal of experimental botany · 2020Article
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Increasing evidence suggests that a gene family encoding proteins containing BURP domains have diverse functions in plants, but systematic characterization of this gene family have not been reported. In this study, 17 BURP family genes (OsBURP01-17) were identified and analyzed in rice (Oryza sativa L.). These genes have diverse exon-intron structures and distinct organization of putative motifs. Based on the phylogenetic analysis of BURP protein sequences from rice and other plant species, the BURP family was classified into seven subfamilies, including two subfamilies (BURP V and BURP VI) with members from rice only and one subfamily (BURP VII) with members from monocotyledons only. Two BURP gene clusters, belonging to BURP V and BURP VI, were located in the duplicated region on chromosome 5 and 6 of rice, respectively. Transcript level analysis of BURP genes of rice in various tissues and organs revealed different tempo-spatial expression patterns, suggesting that these genes may function at different stages of plant growth and development. Interestingly, all the genes of the BURP VII subfamily were predominantly expressed in flower organs. We also investigated the expression patterns of BURP genes of rice under different stress conditions. The results suggested that, except for two genes (OsBURP01 and OsBURP13), all other members were induced by at least one of the stresses including drought, salt, cold, and abscisic acid treatment. Two genes (OsBURP05 and OsBURP16) were responsive to all the stress treatments and most of the OsBURP genes were responsive to salt stress. Promoter sequence analysis revealed an over-abundance of stress-related cis-elements in the stress-responsive genes. The data presented here provide important clues for elucidating the functions of genes of this family.
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