ReviewJournal of bacteriology2009
Gene expression profiling and the use of genome-scale in silico models of Escherichia coli for analysis: providing context for content.
Review in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
31 citing papers in PubMed.
- A community reconstruction of Chinese hamster metabolism and structural systems biology elucidate metabolic rewiring in lactate-free CHO cells.Cell systems · 2026Article
- RBI: a novel algorithm for regulatory-metabolic network model in designing the optimal mutant strain.PeerJ. Computer science · 2025Article
- Article
- From observational to actionable: rethinking omics in biologics production.Trends in biotechnology · 2023Review
- Modulators of a robust and efficient metabolism: Perspective and insights from the Rid superfamily of proteins.Advances in microbial physiology · 2023Review
- Model-based assessment of mammalian cell metabolic functionalities using omics data.Cell reports methods · 2021Article
- The Escherichia coli transcriptome mostly consists of independently regulated modules.Nature communications · 2019Article
- Assessing key decisions for transcriptomic data integration in biochemical networks.PLoS computational biology · 2019Article
- wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool.BMC bioinformatics · 2018Article
- Article
- Global transcriptional regulatory network forProceedings of the National Academy of Sciences of the United States of America · 2017Article
- Resolving the central metabolism of Arabidopsis guard cells.Scientific reports · 2017Article
- The E. coli molecular phenotype under different growth conditions.Scientific reports · 2017Article
- Unsupervised detection of regulatory gene expression information in different genomic regions enables gene expression ranking.BMC bioinformatics · 2017Article
- Systems biology approach: Panacea for unravelling host-virus interactions and dynamics of vaccine induced immune response.Gene reports · 2016Review
- Essential Genes Embody Increased Mutational Robustness to Compensate for the Lack of Backup Genetic Redundancy.PloS one · 2016Article
- Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.Proceedings of the National Academy of Sciences of the United States of America · 2015Article
- Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation.PLoS computational biology · 2015Article
- Identification of Essential Proteins Based on a New Combination of Local Interaction Density and Protein Complexes.PloS one · 2015Article
- Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious.Proceedings of the National Academy of Sciences of the United States of America · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
PubMed holds no abstract for this paper.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.