Evidence map›Paper›PMID 19363091›Full record

ArticlePlant physiology2009

A nonsense mutation in a cinnamyl alcohol dehydrogenase gene is responsible for the Sorghum brown midrib6 phenotype.

Scott E Sattler, Aaron J Saathoff, Eric J Haas, Nathan A Palmer, Deanna L Funnell-Harris, Gautam Sarath, Jeffrey F Pedersen

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 201 citations in OpenAlex.

  1. A NovelPlants (Basel, Switzerland) · 2026
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  2. Review
  3. Review
  4. Transcriptome andFrontiers in plant science · 2025
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  5. Article
  6. Review
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  8. Review
  9. Genome-wide identification of theFrontiers in plant science · 2024
    Article
  10. Lignin, the Lignification Process, and Advanced, Lignin-Based Materials.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. SorghumGenes · 2021
    Article
  19. Article
  20. The Sorghum (Frontiers in plant science · 2021
    Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Scott E SattlerGrain, Forage, and Bioenergy Research Unit, United States Department of Agriculture-Agricultural Research Service, Nebraska, USA. scott.sattler@ars.usda.gov
Aaron J Saathoff
Eric J Haas
Nathan A Palmer
Deanna L Funnell-Harris
Gautam Sarath
Jeffrey F Pedersen
Creighton University · USAgricultural Research Service · USUnited States Department of Agriculture · USUniversity of Nebraska–Lincoln · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Brown midrib6 (bmr6) affects phenylpropanoid metabolism, resulting in reduced lignin concentrations and altered lignin composition in sorghum (Sorghum bicolor). Recently, bmr6 plants were shown to have limited cinnamyl alcohol dehydrogenase activity (CAD; EC 1.1.1.195), the enzyme that catalyzes the conversion of hydroxycinnamoyl aldehydes (monolignals) to monolignols. A candidate gene approach was taken to identify Bmr6. Two CAD genes (Sb02g024190 and Sb04g005950) were identified in the sorghum genome based on similarity to known CAD genes and through DNA sequencing a nonsense mutation was discovered in Sb04g005950 that results in a truncated protein lacking the NADPH-binding and C-terminal catalytic domains. Immunoblotting confirmed that the Bmr6 protein was absent in protein extracts from bmr6 plants. Phylogenetic analysis indicated that Bmr6 is a member of an evolutionarily conserved group of CAD proteins, which function in lignin biosynthesis. In addition, Bmr6 is distinct from the other CAD-like proteins in sorghum, including SbCAD4 (Sb02g024190). Although both Bmr6 and SbCAD4 are expressed in sorghum internodes, an examination of enzymatic activity of recombinant Bmr6 and SbCAD4 showed that Bmr6 had 1 to 2 orders of magnitude greater activity for monolignol substrates. Modeling of Bmr6 and SbCAD4 protein structures showed differences in the amino acid composition of the active site that could explain the difference in enzyme activity. These differences include His-57, which is unique to Bmr6 and other grass CADs. In summary, Bmr6 encodes the major CAD protein involved in lignin synthesis in sorghum, and the bmr6 mutant is a null allele.

Indexed as

Genes, PlantAlcohol OxidoreductasesAmino Acid SequenceBase SequenceCodon, NonsenseGene Expression Regulation, EnzymologicGene Expression Regulation, PlantImmunoblottingKineticsLigninMolecular Sequence DataPhenolsPhenotypePhylogenyPlant ProteinsPlant StemsAlcohol Oxidoreductasescinnamyl alcohol dehydrogenaseCodon, Nonsenseconiferyl alcoholLigninPhenolsPlant Proteins

Identifiers

PMID19363091
PMCPMC2689950
OpenAlexW2165278495

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.