Evidence map›Paper›PMID 19363027›Full record

ArticleThe Journal of biological chemistry2009

Elucidating conformational changes in the gamma-aminobutyric acid transporter-1.

Anne-Kristine Meinild, Donald D F Loo, Soren Skovstrup, Ulrik Gether, Nanna MacAulay

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

  1. Flux coupling, not specificity, shapes the transport and phylogeny of SLC6 glycine transporters.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Anne-Kristine MeinildFrom the Departments of Biology, 2100 Copenhagen, Denmark. Electronic address: smeinild@bio.ku.dk.
Donald D F LooDepartment of Physiology, David Geffen School of Medicine, University of California, Los Angeles, California 90095-1751.
Soren SkovstrupMedicinal Chemistry, 2100 Copenhagen, Denmark.
Ulrik GetherNeuroscience and Pharmacology, 2100 Copenhagen, Denmark.
Nanna MacAulayCellular and Molecular Medicine, University of Copenhagen, 2100 Copenhagen, Denmark.
University of Copenhagen · DKUniversity of California, Los Angeles · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The GABA transporter-1 (GAT-1) has three current-generating modes: GABA-coupled current, Li+-induced leak current, and Na+-dependent transient currents. We earlier hypothesized that Li+ is able to substitute for the first Na+ in the transport cycle and thereby induce a distinct conformation in GAT-1 and that the onset of the Li+-induced leak current at membrane potentials more negative than -50 mV was due to a voltage-dependent conformational change of the Li+-bound transporter. In this study, we set out to verify this hypothesis and seek insight into the structural dynamics underlying the leak current, as well as the sodium-dependent transient currents, by applying voltage clamp fluorometry to tetramethylrhodamine 6-maleimide-labeled GAT-1 expressed in Xenopus laevis oocytes. MTSET accessibility studies demonstrated the presence of two distinct conformations of GAT-1 in the presence of Na+ or Li+. The voltage-dependent fluorescence intensity changes obtained in Li+ buffer correlated with the Li+-induced leak currents, i.e. both were highly voltage-dependent and only present at hyperpolarized potentials (<-50 mV). The transient currents correlated directly with the voltage-dependent fluorescence data obtained in sodium buffer and the associated conformational changes were distinct from those associated with the Li+-induced leak current. The inhibitor potency of SKF89976A of the Li+- versus Na+-bound transporter confirmed the cationic dependence of the conformational occupancy. Our observations suggest that the microdomain situated at the external end of transmembrane I is involved in different conformational changes taking place either during the binding and release of sodium or during the initiation of the Li+-induced leak current.

Indexed as

AnimalsBuffersCystineFluorescenceGABA AgentsGABA Plasma Membrane Transport ProteinsLithium ChlorideMembrane PotentialsNipecotic AcidsOocytesPatch-Clamp TechniquesProtein Structure, SecondaryProtein Structure, TertiaryRatsSodium ChlorideXenopus laevisBuffersCystineGABA AgentsGABA Plasma Membrane Transport ProteinsLithium ChlorideN-(4,4-diphenyl-3-butenyl)nipecotic acidNipecotic AcidsSodium Chloride

Identifiers

PMID19363027
PMCPMC2713550
OpenAlexW1996187338

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.