Evidence map›Paper›PMID 19362172›Full record

ArticleBiochimica et biophysica acta2009

Mouse aminoacylase 3: a metalloenzyme activated by cobalt and nickel.

Kirill Tsirulnikov, Natalia Abuladze, Debra Newman, Sergey Ryazantsev, Talya Wolak, Nathaniel Magilnick, Myong-Chul Koag, Ira Kurtz, Alexander Pushkin

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Structures of aminoacylase 3 in complex with acetylated substrates.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 2 countries.

Kirill TsirulnikovDepartment of Medicine, David Geffen School of Medicine, University of California at Los Angeles, CA 90095, USA.
Natalia Abuladze
Debra Newman
Sergey Ryazantsev
Talya Wolak
Nathaniel Magilnick
Myong-Chul Koag
Ira Kurtz
Alexander Pushkin
University of California, Los Angeles · US

Funding

Biology of Mercapturic Acid Mediated NephrotoxicityR01ES012935 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PUSHKIN, ALEXANDER · 2005 to 2009
$1.8M
NIEHS NIH HHS R01 ES012935
6 · The paper itself

Abstract

Aminoacylase 3 (AA3) deacetylates N-acetyl-aromatic amino acids and mercapturic acids including N-acetyl-1,2-dichlorovinyl-L-cysteine (Ac-DCVC), a metabolite of a xenobiotic trichloroethylene. Previous studies did not demonstrate metal-dependence of AA3 despite a high homology with a Zn(2+)-metalloenzyme aminoacylase 2 (AA2). A 3D model of mouse AA3 was created based on homology with AA2. The model showed a putative metal binding site formed by His21, Glu24 and His116, and Arg63, Asp68, Asn70, Arg71, Glu177 and Tyr287 potentially involved in catalysis/substrate binding. The mutation of each of these residues to alanine inactivated AA3 except Asn70 and Arg71, therefore the corrected 3D model of mouse AA3 was created. Wild type (wt) mouse AA3 expressed in E. coli contained approximately 0.35 zinc atoms per monomer. Incubation with Co(2+) and Ni(2+) activated wt-AA3. In the cobalt-activated AA3 zinc was replaced with cobalt. Metal removal completely inactivated wt-AA3, whereas addition of Zn(2+), Mn(2+) or Fe(2+) restored initial activity. Co(2+) and to a lesser extent Ni(2+) increased activity several times in comparison with intact wt-AA3. Co(2+) drastically increased the rate of deacetylation of Ac-DCVC and significantly increased the toxicity of Ac-DCVC in the HEK293T cells expressing wt-AA3. The results indicate that AA3 is a metalloenzyme significantly activated by Co(2+) and Ni(2+).

Indexed as

AmidohydrolasesAnimalsCloning, MolecularCobaltEnzyme ActivationHeLa CellsHumansMiceModels, MolecularNickelProtein ConformationAmidohydrolasesaminoacylase III, mouseCobaltNickel

Identifiers

PMID19362172
PMCPMC2735877
OpenAlexW2051907577

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.