Evidence map›Paper›PMID 19362163›Full record

ArticleBiochimica et biophysica acta2009

Serine palmitoyltransferase subunit 1 is present in the endoplasmic reticulum, nucleus and focal adhesions, and functions in cell morphology.

Jia Wei, Tokunbo Yerokun, Martina Leipelt, Chris A Haynes, Harish Radhakrishna, Amin Momin, Samuel Kelly, Hyejung Park, Elaine Wang, Jill M Carton and 2 more

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Jia WeiPetit Institute for Bioengineering and Bioscience, Atlanta, GA 30332, USA.
Tokunbo Yerokun
Martina Leipelt
Chris A Haynes
Harish Radhakrishna
Amin Momin
Samuel Kelly
Hyejung Park
Elaine Wang
Jill M Carton
David J Uhlinger
Alfred H Merrill
Georgia Institute of Technology · USJohnson & Johnson (United States) · US

Funding

Characterization of Mammalian Ceramide SynthasesR01GM076217 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI MERRILL, ALFRED HARRISON · 2007 to 2015
$2.4M
MODULATION BY GROWTH FACTORS AND SIGNAL TRANSDUCTIONR01ES009204 · NIEHS · GEORGIA INSTITUTE OF TECHNOLOGY · PI MERRILL, ALFRED HARRISON · 1999 to 2003
$1.0M
NIEHS NIH HHS ES09204NIEHS NIH HHS R01 ES009204NIGMS NIH HHS GM076217NIGMS NIH HHS R01 GM076217
6 · The paper itself

Abstract

Serine palmitoyltransferase (SPT) has been localized to the endoplasmic reticulum (ER) by subcellular fractionation and enzymatic assays, and fluorescence microscopy of epitope-tagged SPT; however, our studies have suggested that SPT subunit 1 might be present also in focal adhesions and the nucleus. These additional locations have been confirmed by confocal microscopy using HEK293 and HeLa cells, and for focal adhesions by the demonstration that SPT1 co-immunoprecipitates with vinculin, a focal adhesion marker protein. The focal adhesion localization of SPT1 is associated with cell morphology, and possibly cell migration, because it is seen in most cells before they reach confluence but disappears when they become confluent, and is restored by a standard scratch-wound healing assay. Conversely, elimination of SPT1 using SPTLC1 siRNA causes cell rounding. Thus, in addition to its "traditional" localization in the ER for de novo sphingolipid biosynthesis, SPT1 is present in other cellular compartments, including focal adhesions where it is associated with cell morphology.

Indexed as

Cell ShapeATP Binding Cassette Transporter 1ATP-Binding Cassette TransportersCell AdhesionCell LineCell MembraneCell NucleusEndoplasmic ReticulumFocal AdhesionsGene SilencingHumansImmunoprecipitationProtein SubunitsProtein TransportReproducibility of ResultsRNA, Small InterferingATP Binding Cassette Transporter 1ATP-Binding Cassette TransportersProtein SubunitsRNA, Small InterferingSerine C-PalmitoyltransferaseSphingolipidsVinculin

Identifiers

PMID19362163
PMCPMC2801055
OpenAlexW2043553824

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.