Evidence map›Paper›PMID 19361491›Full record

ArticleDevelopmental biology2009

The C. elegans sex determination gene laf-1 encodes a putative DEAD-box RNA helicase.

Amy Hubert, Philip Anderson

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.5field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. ADR-2 regulates fertility and oocyte fate inbioRxiv : the preprint server for biology · 2024
    Article
  6. ATP-induced crosslinking of a biomolecular condensate.bioRxiv : the preprint server for biology · 2023
    Article
  7. Review
  8. Regulatory roles ofFrontiers in physiology · 2022
    Article
  9. Sex Determination in Nematode Germ Cells.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2022
    Review
  10. Identifying sequence perturbations to an intrinsically disordered protein that determine its phase-separation behavior.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. The disordered P granule protein LAF-1 drives phase separation into droplets with tunable viscosity and dynamics.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  15. Article
  16. Article
  17. Somatic sex determination in Caenorhabditis elegans is modulated by SUP-26 repression of tra-2 translation.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Amy HubertDepartment of Genetics, University of Wisconsin, 425-G Henry Mall, Madison, WI 53706, USA.
Philip Anderson
University of Wisconsin–Madison · US

Funding

GENETIC &MOLECULAR STUDIES OF NEMATODE MRNA DEGRADATIONR01GM050933 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ANDERSON, PHILIP · 1994 to 2011
$4.0M
Characterization of C elegans laf-1: a regulatory ncRNAR01GM073183 · NIGMS · UNIVERSITY OF WISCONSIN MADISON · PI GOODWIN, ELIZABETH B. · 2005 to 2005
$316k
NIGMS NIH HHS GM073138NIGMS NIH HHS R01 GM050933NIGMS NIH HHS R01 GM073183
6 · The paper itself

Abstract

The Caenorhabditis elegans gene laf-1 is critical for both embryonic development and sex determination. Laf-1 is thought to promote male cell fates by negatively regulating expression of tra-2 in both hermaphrodites and males. We cloned laf-1 and established that it encodes a putative DEAD-box RNA helicase related to Saccharomycescerevisiae Ded1p and Drosophila Vasa. Three sequenced laf-1 mutations are missense alleles affecting a small region of the protein in or near helicase motif III. We demonstrate that the phenotypes resulting from laf-1 mutations are due to loss or reduction of laf-1 function, and that both laf-1 and a related helicase vbh-1 function in germline sex determination. Laf-1 mRNA is expressed in both males and hermaphrodites and in both the germline and soma of hermaphrodites. It is expressed at all developmental stages and is most abundant in embryos. LAF-1 is predominantly, if not exclusively, cytoplasmic and colocalizes with PGL-1 in P granules of germline precursor cells. Previous results suggest that laf-1 functions to negatively regulate expression of the sex determination protein TRA-2, and we find that the abundance of TRA-2 is modestly elevated in laf-1/+ females. We discuss potential functions of LAF-1 as a helicase and its roles in sex determination.

Indexed as

Sex Determination ProcessesAmino Acid SequenceAnimalsBlotting, NorthernCaenorhabditis elegansDEAD-box RNA HelicasesFemaleGene Expression Regulation, DevelopmentalGerm CellsMaleMolecular Sequence DataMutationPhylogenyRNA InterferenceSequence Homology, Amino AcidTransgenesDEAD-box RNA Helicases

Identifiers

PMID19361491
PMCPMC2802855
OpenAlexW2017713172

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.