Evidence map›Paper›PMID 19361433›Full record

ArticleJournal of molecular biology2009

Molecular dynamism of Fe-S cluster biosynthesis implicated by the structure of the SufC(2)-SufD(2) complex.

Kei Wada, Norika Sumi, Rina Nagai, Kenji Iwasaki, Takayuki Sato, Kei Suzuki, Yuko Hasegawa, Shintaro Kitaoka, Yoshiko Minami, F Wayne Outten and 2 more

Abstract read
In one paragraph

Article in Journal of molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Fe-S cluster biogenesis by the bacterial Suf pathway.Biochimica et biophysica acta. Molecular cell research · 2020
    Review
  4. The unique fold and lability of the [2Fe-2S] clusters of NEET proteins mediate their key functions in health and disease.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Review
  5. Iron-sulfur clusters biogenesis by the SUF machinery: close to the molecular mechanism understanding.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Review
  6. Article
  7. Article
  8. SufB intein of Mycobacterium tuberculosis as a sensor for oxidative and nitrosative stresses.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  9. Review
  10. Article
  11. Article
  12. The apicomplexan plastid and its evolution.Cellular and molecular life sciences : CMLS · 2011
    Review
  13. Article
  14. Article
  15. Building Fe-S proteins: bacterial strategies.Nature reviews. Microbiology · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Kei WadaDepartment of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan.
Norika Sumi
Rina Nagai
Kenji Iwasaki
Takayuki Sato
Kei Suzuki
Yuko Hasegawa
Shintaro Kitaoka
Yoshiko Minami
F Wayne Outten
Yasuhiro Takahashi
Keiichi Fukuyama

Funding

Characterization of the Suf Fe-S Cluster Biosynthesis Pathway Under StressR01GM081706 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI OUTTEN, FRANKLIN WAYNE · 2007 to 2011
$1.1M
NIGMS NIH HHS GM81706NIGMS NIH HHS R01 GM081706
6 · The paper itself

Abstract

Maturation of iron-sulfur (Fe-S) proteins is achieved by the SUF machinery in a wide number of eubacteria and archaea, as well as eukaryotic chloroplasts. This machinery is encoded in Escherichia coli by the sufABCDSE operon, where three Suf components, SufB, SufC, and SufD, form a complex and appear to provide an intermediary site for the Fe-S cluster assembly. Here, we report the quaternary structure of the SufC(2)-SufD(2) complex in which SufC is bound to the C-terminal domain of SufD. Comparison with the monomeric structure of SufC revealed conformational change of the active-site residues: SufC becomes competent for ATP binding and hydrolysis upon association with SufD. The two SufC subunits were spatially separated in the SufC(2)-SufD(2) complex, whereas cross-linking experiments in solution have indicated that two SufC molecules associate with each other in the presence of Mg(2+) and ATP. Such dimer formation of SufC may lead to a gross structural change of the SufC(2)-SufD(2) complex. Furthermore, genetic analysis of SufD revealed an essential histidine residue buried inside the dimer interface, suggesting that conformational change may expose this crucial residue. These findings, together with biochemical characterization of the SufB-SufC-SufD complex, have led us to propose a model for the Fe-S cluster biosynthesis in the complex.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateAmino Acid SequenceCrystallography, X-RayDimerizationElectrophoresis, Polyacrylamide GelEscherichia coli ProteinsIron-Sulfur ProteinsMicroscopy, Electron, TransmissionModels, MolecularMolecular Sequence DataProtein Structure, QuaternarySequence Homology, Amino AcidAdenosine TriphosphatasesAdenosine TriphosphateEscherichia coli ProteinsIron-Sulfur ProteinsSufC protein, E coli

Identifiers

PMID19361433
PMCPMC2744881

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.