Evidence map›Paper›PMID 19361414›Full record

ArticleJournal of molecular biology2009

Proline isomerization preorganizes the Itk SH2 domain for binding to the Itk SH3 domain.

Andrew Severin, Raji E Joseph, Scott Boyken, D Bruce Fulton, Amy H Andreotti

Abstract read
In one paragraph

Article in Journal of molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Dynamics of the Tec-family tyrosine kinase SH3 domains.Protein science : a publication of the Protein Society · 2016
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Protein conformational switches: from nature to design.Chemistry (Weinheim an der Bergstrasse, Germany) · 2012
    Review
  12. Article
  13. Structure of the interleukin-2 tyrosine kinase Src homology 2 domain; comparison between X-ray and NMR-derived structures.Acta crystallographica. Section F, Structural biology and crystallization communications · 2012
    Article
  14. Article
  15. NMR reveals novel mechanisms of protein activity regulation.Protein science : a publication of the Protein Society · 2011
    Review
  16. Purification, crystallization and preliminary crystallographic analysis of the SH2 domain of IL-2-inducible T-cell kinase.Acta crystallographica. Section F, Structural biology and crystallization communications · 2011
    Article
  17. Article
  18. T-cell signaling regulated by the Tec family kinase, Itk.Cold Spring Harbor perspectives in biology · 2010
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andrew SeverinDepartment of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50010, USA.
Raji E Joseph
Scott Boyken
D Bruce Fulton
Amy H Andreotti

Funding

STRUCTURAL STUDIES OF A T CELL SPECIFIC TYROSINE KINASER01AI043957 · NIAID · IOWA STATE UNIVERSITY · PI AMY H ANDREOTTI, LESLIE JOAN BERG · 1999 to 2026
$9.5M
NIAID NIH HHS AI43957NIAID NIH HHS R01 AI043957
6 · The paper itself

Abstract

We report here the NMR-derived structure of the binary complex formed by the interleukin-2 tyrosine kinase (Itk) Src homology 3 (SH3) and Src homology 2 (SH2) domains. The interaction is independent of both a phosphotyrosine motif and a proline-rich sequence, the classical targets of the SH2 and SH3 domains, respectively. The Itk SH3/SH2 structure reveals the molecular details of this nonclassical interaction and provides a clear picture for how the previously described prolyl cis/trans isomerization present in the Itk SH2 domain mediates SH3 binding. The higher-affinity cis SH2 conformer is preorganized to form a hydrophobic interface with the SH3 domain. The structure also provides insight into how autophosphorylation in the Itk SH3 domain might increase the affinity of the intermolecular SH3/SH2 interaction. Finally, we can compare this Itk complex with other examples of SH3 and SH2 domains engaging their ligands in a nonclassical manner. These small binding domains exhibit a surprising level of diversity in their binding repertoires.

Indexed as

Protein Structure, Secondarysrc Homology DomainsAnimalsBinding SitesIsomerismLigandsModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProlineProtein BindingProtein-Tyrosine Kinasesemt protein-tyrosine kinaseLigandsProlineProtein-Tyrosine Kinases

Identifiers

PMID19361414
PMCPMC2810249

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.