Evidence map›Paper›PMID 19360663›Full record

ArticleAutism research : official journal of the International Society for Autism Research2008

Genetic evidence implicating multiple genes in the MET receptor tyrosine kinase pathway in autism spectrum disorder.

Daniel B Campbell, Chun Li, James S Sutcliffe, Antonio M Persico, Pat Levitt

Open access · greenAbstract read
In one paragraph

Article in Autism research : official journal of the International Society for Autism Research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed, 1 pooled it
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 1 synthesis or guideline pooled it, 155 citations in OpenAlex.

  1. Pooled it
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  15. Mechanisms regulating dendritic arbor patterning.Cellular and molecular life sciences : CMLS · 2017
    Review
  16. Article
  17. Pregnancy at Advanced Maternal Age Affects Behavior and Hippocampal Gene Expression in Mouse Offspring.The journals of gerontology. Series A, Biological sciences and medical sciences · 2017
    Article
  18. Article
  19. Review
  20. Autism-specific maternal anti-fetal brain autoantibodies are associated with metabolic conditions.Autism research : official journal of the International Society for Autism Research · 2017
    Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Daniel B CampbellDepartment of Pharmacology, Vanderbilt University, Nashville, Tennessee 37232, USA. daniel.campbell@vanderbilt.edu
Chun Li
James S Sutcliffe
Antonio M Persico
Pat Levitt
Vanderbilt University · USFondazione Santa Lucia · ITJohn F. Kennedy Center for the Performing Arts · US

Funding

THREE-TIERED PREVENTION MODEL TO BETTER SERVE ALL STUDENP30HD015052 · NICHD · VANDERBILT UNIVERSITY · PI DYKENS, ELISABETH MAY · 1985 to 2014
$18.6M
Genomewide Search--Autism Susceptibility Loci-supplementR01MH064547 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GESCHWIND, DANIEL H · 2002 to 2006
$9.6M
MOLECULAR GENETICS OF 15Q11-Q13 DEFECTS IN AUTISMR01MH061009 · NIMH · VANDERBILT UNIVERSITY · PI SUTCLIFFE, JAMES S · 2000 to 2008
$3.3M
Unraveling the Genetic Etiology of AutismR01NS049261 · NINDS · VANDERBILT UNIVERSITY · PI SUTCLIFFE, JAMES S · 2006 to 2010
$2.5M
COLLABORATIVE LINKAGE STUDY OF AUTISMR01MH055135 · NIMH · TUFTS MEDICAL CENTER · PI FOLSTEIN, SUSAN E. · 1999 to 2002
$2.1M
COLLABORATIVE LINKAGE STUDY OF AUTISMR10MH055135 · NIMH · TUFTS MEDICAL CENTER · PI FOLSTEIN, SUSAN E. · 1996 to 1998
–
NICHD NIH HHS HD015052NICHD NIH HHS P30 HD015052NIMH NIH HHS MH055135NIMH NIH HHS MH061009NIMH NIH HHS MH064547NIMH NIH HHS MH065299NIMH NIH HHS R01 MH061009NIMH NIH HHS R01 MH064547NINDS NIH HHS NS049261NINDS NIH HHS R01 NS049261
6 · The paper itself

Abstract

A functional promoter variant of the gene encoding the MET receptor tyrosine kinase alters SP1 and SUB1 transcription factor binding, and is associated with autism spectrum disorder (ASD). Recent analyses of postmortem cerebral cortex from ASD patients revealed altered expression of MET protein and three transcripts encoding proteins that regulate MET signaling, hepatocyte growth factor (HGF), urokinase plasminogen activator receptor (PLAUR) and plasminogen activator inhibitor-1 (SERPINE1). To address potential risk conferred by multiple genes in the MET signaling pathway, we screened all exons and 5' promoter regions for variants in the five genes encoding proteins that regulate MET expression and activity. Identified variants were genotyped in 664 families (2,712 individuals including 1,228 with ASD) and 312 unrelated controls. Replicating our initial findings, family-based association test (FBAT) analyses demonstrated that the MET promoter variant rs1858830 C allele was associated with ASD in 101 new families (P=0.033). Two other genes in the MET signaling pathway also may confer risk. A haplotype of the SERPINE1 gene exhibited significant association. In addition, the PLAUR promoter variant rs344781 T allele was associated with ASD by both FBAT (P=0.006) and case-control analyses (P=0.007). The PLAUR promoter rs344781 relative risk was 1.93 (95% confidence interval [CI]: 1.12-3.31) for genotype TT and 2.42 (95% CI: 1.38-4.25) for genotype CT compared to genotype CC. Gene-gene interaction analyses suggested a significant interaction between MET and PLAUR. These data further support our hypothesis that genetic susceptibility impacting multiple components of the MET signaling pathway contributes to ASD risk.

Indexed as

AllelesAutistic DisorderExonsGenotypeHepatocyte Growth FactorHumansLinkage DisequilibriumPlasminogen Activator Inhibitor 1Proto-Oncogene ProteinsProto-Oncogene Proteins c-metReceptors, Growth FactorReceptors, Urokinase Plasminogen ActivatorSignal TransductionHepatocyte Growth FactorMET protein, humanPlasminogen Activator Inhibitor 1PLAUR protein, humanProto-Oncogene ProteinsProto-Oncogene Proteins c-metReceptors, Growth FactorReceptors, Urokinase Plasminogen ActivatorSERPINE1 protein, human

Identifiers

PMID19360663
PMCPMC2678909
OpenAlexW2140948518

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.