Evidence map›Paper›PMID 19359498›Full record

ArticleThe Journal of molecular diagnostics : JMD2009

Development of genomic reference materials for cystic fibrosis genetic testing.

Victoria M Pratt, Michele Caggana, Christina Bridges, Arlene M Buller, Lisa DiAntonio, W Edward Highsmith, Leonard M Holtegaard, Kasinathan Muralidharan, Elizabeth M Rohlfs, Jack Tarleton and 3 more

Abstract read
In one paragraph

Article in The Journal of molecular diagnostics : JMD, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Genetic evaluation of male infertility.Translational andrology and urology · 2014
    Review
  12. Review of Azoospermia.Spermatogenesis · 2014
    Review
  13. Bridging the gap: moving predictive and prognostic assays from research to clinical use.Clinical cancer research : an official journal of the American Association for Cancer Research · 2012
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Cystic fibrosis testing comes of age.The Journal of molecular diagnostics : JMD · 2009
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Victoria M PrattQuest Diagnostics, Nichols Institute, Chantilly, Virginia, USA. Victoria.m.pratt@questdiagnostics.com
Michele Caggana
Christina Bridges
Arlene M Buller
Lisa DiAntonio
W Edward Highsmith
Leonard M Holtegaard
Kasinathan Muralidharan
Elizabeth M Rohlfs
Jack Tarleton
Lorraine Toji
Shannon D Barker
Lisa V Kalman

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The number of different laboratories that perform genetic testing for cystic fibrosis is increasing. However, there are a limited number of quality control and other reference materials available, none of which cover all of the alleles included in commercially available reagents or platforms. The alleles in many publicly available cell lines that could serve as reference materials have neither been confirmed nor characterized. The Centers for Disease Control and Prevention-based Genetic Testing Reference Material Coordination Program, in collaboration with members of the genetic testing community as well as Coriell Cell Repositories, have characterized an extended panel of publicly available genomic DNA samples that could serve as reference materials for cystic fibrosis testing. Six cell lines [containing the following mutations: E60X (c.178G>T), 444delA (c.312delA), G178R (c.532G>C), 1812-1G>A (c.1680-1G>A), P574H (c.1721C>A), Y1092X (c.3277C>A), and M1101K (c.3302T>A)] were selected from those existing at Coriell, and seven [containing the following mutations: R75X (c.223C>T), R347H (c.1040G>A), 3876delA (c.3744delA), S549R (c.1646A>C), S549N (c.1647G>A), 3905insT (c.3773_3774insT), and I507V (c.1519A>G)] were created. The alleles in these materials were confirmed by testing in six different volunteer laboratories. These genomic DNA reference materials will be useful for quality assurance, proficiency testing, test development, and research and should help to assure the accuracy of cystic fibrosis genetic testing in the future. The reference materials described in this study are all currently available from Coriell Cell Repositories.

Indexed as

AllelesCell LineCystic FibrosisGenetic TestingGenome, HumanHumansLaboratoriesReference StandardsSensitivity and Specificity

Identifiers

PMID19359498
PMCPMC2671335

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.