Evidence map›Paper›PMID 19357640›Full record

ArticleMolecular systems biology2009

GPIomics: global analysis of glycosylphosphatidylinositol-anchored molecules of Trypanosoma cruzi.

Ernesto S Nakayasu, Dmitry V Yashunsky, Lilian L Nohara, Ana Claudia T Torrecilhas, Andrei V Nikolaev, Igor C Almeida

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 86 citations in OpenAlex.

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  13. Extracellular vesicles fromFrontiers in cellular and infection microbiology · 2022
    Article
  14. Mechanisms Associated withLife (Basel, Switzerland) · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Ernesto S NakayasuDepartment of Biological Sciences, The Border Biomedical Research Center, University of Texas at El Paso, El Paso, TX 79968, USA.
Dmitry V Yashunsky
Lilian L Nohara
Ana Claudia T Torrecilhas
Andrei V Nikolaev
Igor C Almeida
The University of Texas at El Paso · USWellcome Trust · GBUniversidade de São Paulo · BR

Funding

TOXICOLOGY PROJECTG12RR008124 · NCRR · UNIVERSITY OF TEXAS EL PASO · PI WALSH, ELIZABETH J · 1992 to 2011
$20.8M
UTEP SCORE InstrumentationS06GM008012 · NIGMS · UNIVERSITY OF TEXAS EL PASO · PI ALMEIDA, IGOR C · 1989 to 2010
$15.8M
Molecular Composition and Function of Trypanosoma cruzi Shed VesiclesR01AI070655 · NIAID · UNIVERSITY OF TEXAS EL PASO · PI ALMEIDA, IGOR C · 2007 to 2011
$1.8M
NCRR NIH HHS 5G12 RR008124NCRR NIH HHS G12 RR008124NIAID NIH HHS 1R01 AI070655NIAID NIH HHS R01 AI070655NIGMS NIH HHS 2S06 GM008012-37NIGMS NIH HHS S06 GM008012Wellcome TrustWellcome Trust 067089/Z/02/Z
6 · The paper itself

Abstract

Glycosylphosphatidylinositol (GPI) anchoring is a common, relevant posttranslational modification of eukaryotic surface proteins. Here, we developed a fast, simple, and highly sensitive (high attomole-low femtomole range) method that uses liquid chromatography-tandem mass spectrometry (LC-MS(n)) for the first large-scale analysis of GPI-anchored molecules (i.e., the GPIome) of a eukaryote, Trypanosoma cruzi, the etiologic agent of Chagas disease. Our genome-wise prediction analysis revealed that approximately 12% of T. cruzi genes possibly encode GPI-anchored proteins. By analyzing the GPIome of T. cruzi insect-dwelling epimastigote stage using LC-MS(n), we identified 90 GPI species, of which 79 were novel. Moreover, we determined that mucins coded by the T. cruzi small mucin-like gene (TcSMUG S) family are the major GPI-anchored proteins expressed on the epimastigote cell surface. TcSMUG S mucin mature sequences are short (56-85 amino acids) and highly O-glycosylated, and contain few proteolytic sites, therefore, less likely susceptible to proteases of the midgut of the insect vector. We propose that our approach could be used for the high throughput GPIomic analysis of other lower and higher eukaryotes.

Indexed as

GlycomicsAmino Acid SequenceAnimalsChromatography, LiquidEndopeptidase KGenome, ProtozoanGlycosylphosphatidylinositolsLipidsMass SpectrometryMolecular Sequence DataPeptidesPolysaccharidesPolystyrenesProtozoan ProteinsTime FactorsTrypanosoma cruziEndopeptidase KGlycosylphosphatidylinositolsLipidsPeptidesPolysaccharidesPolystyrenesProtozoan ProteinsTrypsin

Identifiers

PMID19357640
PMCPMC2683718
OpenAlexW2110451407

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.