Evidence map›Paper›PMID 19357161›Full record

ArticleJournal of virology2009

Identification of a novel determinant for membrane association in hepatitis C virus nonstructural protein 4B.

Jérôme Gouttenoire, Valérie Castet, Roland Montserret, Naveen Arora, Vincent Raussens, Jean-Marie Ruysschaert, Eric Diesis, Hubert E Blum, François Penin, Darius Moradpour

Abstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
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  9. Article
  10. Article
  11. Hepatitis C virus relies on lipoproteins for its life cycle.World journal of gastroenterology · 2016
    Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Membrane interacting regions of Dengue virus NS2A protein.The journal of physical chemistry. B · 2014
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jérôme GouttenoireDivision of Gastroenterology and Hepatology, Centre Hospitalier Universitaire Vaudois, University of Lausanne, Lausanne, Switzerland.
Valérie Castet
Roland Montserret
Naveen Arora
Vincent Raussens
Jean-Marie Ruysschaert
Eric Diesis
Hubert E Blum
François Penin
Darius Moradpour

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nonstructural protein 4B (NS4B) plays an essential role in the formation of the hepatitis C virus (HCV) replication complex. It is a relatively poorly characterized integral membrane protein predicted to comprise four transmembrane segments in its central portion. Here, we describe a novel determinant for membrane association represented by amino acids (aa) 40 to 69 in the N-terminal portion of NS4B. This segment was sufficient to target and tightly anchor the green fluorescent protein to cellular membranes, as assessed by fluorescence microscopy as well as membrane extraction and flotation analyses. Circular dichroism and nuclear magnetic resonance structural analyses showed that this segment comprises an amphipathic alpha-helix extending from aa 42 to 66. Attenuated total reflection infrared spectroscopy and glycosylation acceptor site tagging revealed that this amphipathic alpha-helix has the potential to traverse the phospholipid bilayer as a transmembrane segment, likely upon oligomerization. Alanine substitution of the fully conserved aromatic residues on the hydrophobic helix side abrogated membrane association of the segment comprising aa 40 to 69 and disrupted the formation of a functional replication complex. These results provide the first atomic resolution structure of an essential membrane-associated determinant of HCV NS4B.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionCell Line, TumorCell MembraneCircular DichroismGreen Fluorescent ProteinsHepacivirusHumansMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataProtein Structure, SecondaryProtein Structure, TertiaryRecombinant Fusion ProteinsSequence AlignmentSpectroscopy, Fourier Transform InfraredGreen Fluorescent ProteinsNS4B protein, flavivirusRecombinant Fusion ProteinsViral Nonstructural Proteins

Identifiers

PMID19357161
PMCPMC2687391

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.