Evidence map›Paper›PMID 19357078›Full record

ArticleThe Journal of biological chemistry2009

Oligomeric structure of colicin ia channel in lipid bilayer membranes.

Sarah L Greig, Mazdak Radjainia, Alok K Mitra

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Bacterial pore-forming toxins.Microbiology (Reading, England) · 2022
    Article
  4. Pore formation by dimeric Bak and Bax: an unusual pore?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sarah L GreigFrom the School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland 1142, New Zealand.
Mazdak RadjainiaFrom the School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland 1142, New Zealand.
Alok K MitraFrom the School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland 1142, New Zealand. Electronic address: a.mitra@auckland.ac.nz.
University of Auckland · NZ

Funding

Structural studies of membrane proteins in lipid bilayerR21DK060827 · NIDDK · UNIVERSITY OF AUCKLAND · PI MITRA, ALOK K · 2001 to 2002
$285k
NIDDK NIH HHS R21 DK060827
6 · The paper itself

Abstract

Colicin Ia is a soluble, harpoon-shaped bacteriocin which translocates across the periplasmic space of sensitive Escherichia coli cell by parasitizing an outer membrane receptor and forms voltage-gated ion channels in the inner membrane. This process leads to cell death, which has been thought to be caused by a single colicin Ia molecule. To directly visualize the three-dimensional structure of the channel, we generated two-dimensional crystals of colicin Ia inserted in lipid-bilayer membranes and determined a approximately 17 three-dimensional model by electron crystallography. Supported by velocity sedimentation, chemical cross-linking and single-particle image analysis, the three-dimensional structure is a crown-shaped oligomer enclosing a approximately 35 A-wide extrabilayer vestibule. Our study suggests that lipid insertion instigates a global conformational change in colicin Ia and that more than one molecule participates in the channel architecture with the vestibule, possibly facilitating the known large scale peptide translocation upon channel opening.

Indexed as

Bacterial Outer Membrane ProteinsCentrifugation, Density GradientColicinsCross-Linking ReagentsCrystallography, X-RayEscherichia coliLipid BilayersMicroscopy, ElectronModels, ChemicalMolecular ConformationProtein Structure, TertiaryStructure-Activity RelationshipSucroseBacterial Outer Membrane ProteinsColicinsCross-Linking ReagentsLipid BilayersSucrose

Identifiers

PMID19357078
PMCPMC2713560
OpenAlexW2007567597

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.