Evidence map›Paper›PMID 19353646›Full record

ArticleAmerican journal of medical genetics. Part A2009

NR2F1 deletion in a patient with a de novo paracentric inversion, inv(5)(q15q33.2), and syndromic deafness.

Kerry K Brown, Fowzan S Alkuraya, Michael Matos, Richard L Robertson, Virginia E Kimonis, Cynthia C Morton

Open access · greenAbstract readCase Reports
In one paragraph

Article in American journal of medical genetics. Part A, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Atrial and Sinoatrial Node Development in the Zebrafish Heart.Journal of cardiovascular development and disease · 2021
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  9. PathogenicBrain communications · 2021
    Article
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  14. The novel lncRNAeLife · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. NovelCold Spring Harbor molecular case studies · 2017
    Review
  19. Article
  20. COUP-TFs and eye development.Biochimica et biophysica acta · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Kerry K BrownDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Fowzan S Alkuraya
Michael Matos
Richard L Robertson
Virginia E Kimonis
Cynthia C Morton
Harvard University · USBoston Children's Hospital · USNew Hampshire Hospital · US

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI Deborah J Goff · 1985 to 2026
$330.6M
RAPID GENE DISCOVERYP01GM061354 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI MORTON, CYNTHIA CASSON · 2001 to 2019
$24.3M
CLONING GENES INVOLVED IN HEARINGR01DC003402 · NIDCD · BRIGHAM AND WOMEN'S HOSPITAL · PI MORTON, CYNTHIA CASSON · 1997 to 2012
$4.0M
Hearing loss associated with chromosomal rearrangementsF31DC007540 · NIDCD · BRIGHAM AND WOMEN'S HOSPITAL · PI BROWN, KERRY KOCHER · 2005 to 2007
$92k
NCI NIH HHS P30 CA006516NIDCD NIH HHS F31 DC007540NIDCD NIH HHS R01 DC003402NIGMS NIH HHS P01 GM061354
6 · The paper itself

Abstract

In an effort to discover genes important for human development, we have ascertained patients with congenital anomalies and cytogenetically balanced chromosomal rearrangements. Herein, we report a 4-year-old girl with profound deafness, a history of feeding difficulties, dysmorphism, strabismus, developmental delay, and an apparently balanced de novo paracentric chromosome 5 inversion, inv(5)(q15q33.2). Molecular cytogenetic analysis of the inversion revealed the presence of microdeletions of approximately 400-500 kb at or near both breakpoints. The 5q15 microdeletion completely removes the nuclear receptor NR2F1 (COUP-TFI) from the inverted chromosome 5. We propose haploinsufficiency of NR2F1 to be the cause of the patient's deafness and many of the other associated anomalies based on striking similarity with the Nr2f1 null mouse. Additionally, this study further highlights the need for high resolution analysis of clinical samples with chromosomal rearrangements as associated deletions may be primarily responsible for the clinical features of these patients.

Indexed as

Gene DeletionChild, PreschoolChromosome InversionChromosome MappingChromosomes, Human, Pair 5COUP Transcription Factor IFemaleHearing Loss, BilateralHearing Loss, SensorineuralHumansIn Situ Hybridization, FluorescenceCOUP Transcription Factor INR2F1 protein, human

Identifiers

PMID19353646
PMCPMC2777524
OpenAlexW2147310208

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.