Evidence map›Paper›PMID 19351883›Full record

ArticleThe Journal of biological chemistry2009

Stepwise evolution of the herpes simplex virus origin binding protein and origin of replication.

Monica Olsson, Ka-Wei Tang, Cecilia Persson, L Marcus Wilhelmsson, Martin Billeter, Per Elias

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  3. Anellovirus protein encoded byProceedings of the National Academy of Sciences of the United States of America · 2025
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  5. Article
  6. Herpes simplex virus 1 ICP8 mutant lacking annealing activity is deficient for viral DNA replication.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Herpes simplex viruses: mechanisms of DNA replication.Cold Spring Harbor perspectives in biology · 2012
    Review
  12. Article
  13. Replication and recombination of herpes simplex virus DNA.The Journal of biological chemistry · 2011
    Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Monica OlssonFrom the Institute of Biomedicine, Department of Medical Biochemistry and Cell Biology, Sahlgrenska Academy, University of Gothenburg, Box 440, S-405 30 Gothenburg.
Ka-Wei TangFrom the Institute of Biomedicine, Department of Medical Biochemistry and Cell Biology, Sahlgrenska Academy, University of Gothenburg, Box 440, S-405 30 Gothenburg.
Cecilia PerssonThe Swedish NMR Centre at University of Gothenburg, Box 465, S-405 30 Gothenburg.
L Marcus WilhelmssonDepartment of Chemical and Biological Engineering/Physical Chemistry, Chalmers University of Technology, Kemivägen 10, S-412 96 Gothenburg.
Martin BilleterBiophysics Group, Department of Chemistry, University of Gothenburg, Box 462, S-405 30 Gothenburg, Sweden.
Per EliasFrom the Institute of Biomedicine, Department of Medical Biochemistry and Cell Biology, Sahlgrenska Academy, University of Gothenburg, Box 440, S-405 30 Gothenburg. Electronic address: per.elias@medkem.gu.se.
University of Gothenburg · SEChalmers University of Technology · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The herpes simplex virus replicon consists of cis-acting sequences, oriS and oriL, and the origin binding protein (OBP) encoded by the UL9 gene. Here we identify essential structural features in the initiator protein OBP and the replicator sequence oriS, and we relate the appearance of these motifs to the evolutionary history of the alphaherpesvirus replicon. Our results reveal two conserved sequence elements in herpes simplex virus type 1, OBP; the RVKNL motif, common to and specific for all alphaherpesviruses, is required for DNA binding, and the WP XXXGAXXFXX L motif, found in a subset of alphaherpesviruses, is required for specific binding to the single strand DNA-binding protein ICP8. A 121-amino acid minimal DNA binding domain containing conserved residues is not soluble and does not bind DNA. Additional sequences present 220 amino acids upstream from the RVKNL motif are needed for solubility and function. We also examine the binding sites for OBP in origins of DNA replication and how they are arranged. NMR and DNA melting experiments demonstrate that origin sequences derived from many, but not all, alphaherpesviruses can adopt stable boxI/boxIII hairpin conformations. Our results reveal a stepwise evolutionary history of the herpes simplex virus replicon and suggest that replicon divergence contributed to the formation of major branches of the herpesvirus family.

Indexed as

Evolution, MolecularAlphaherpesvirinaeConserved SequenceDNA-Binding ProteinsDNA, ViralGenome, ViralHerpesvirus 1, HumanNucleic Acid ConformationReplication OriginViral ProteinsVirus ReplicationDNA-Binding ProteinsDNA, ViralUL9 protein, Human herpesvirus 1Viral Proteins

Identifiers

PMID19351883
PMCPMC2713539
OpenAlexW1987104081

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.