Evidence map›Paper›PMID 19351829›Full record

ArticleCancer research2009

A primary xenograft model of small-cell lung cancer reveals irreversible changes in gene expression imposed by culture in vitro.

Vincent C Daniel, Luigi Marchionni, Jared S Hierman, Jonathan T Rhodes, Wendy L Devereux, Charles M Rudin, Rex Yung, Giovanni Parmigiani, Marion Dorsch, Craig D Peacock and 1 more

Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in Cancer research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04279509 (Selecting Chemotherapy With High-throughput Drug Screen Assay Using Patient Derived Organoids in Patients With Refractory Solid Tumours), which is not on this map. Cited by 277 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
277citing papers in PubMed, 1 pooled it
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04279509 naunknown statusnot on this mapstarted 2019, after this paper: background citation

Selecting Chemotherapy With High-throughput Drug Screen Assay Using Patient Derived Organoids in Patients With Refractory Solid Tumours (SCORE)

TypeinterventionalSponsorNational University Hospital, SingaporeRan2019 to 2022Enrolled35ConditionsOrganoids, HNSCC, Epithelial Ovarian Cancer, Colorectal CancerArmsTumor Core Biopsy, Blood sampling
3 · Its place in the literature

Who cites it

277 citing papers in PubMed, 1 synthesis or guideline pooled it, 477 citations in OpenAlex.

  1. Pooled it
  2. Orthotopic Implants in Mice.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
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  18. Precision models in hepatocellular carcinoma.Nature reviews. Gastroenterology & hepatology · 2025
    Review
  19. Article
  20. Review

217 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Vincent C DanielDepartment of Surgery, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA.
Luigi Marchionni
Jared S Hierman
Jonathan T Rhodes
Wendy L Devereux
Charles M Rudin
Rex Yung
Giovanni Parmigiani
Marion Dorsch
Craig D Peacock
D Neil Watkins
Johns Hopkins University · USMonash Institute of Medical Research · AU

Funding

TARGETING EARLY CHANGES FOR NEW SCREENING STRATEGIESP50CA058184 · NCI · JOHNS HOPKINS UNIVERSITY · PI BISWAL, SHYAM · 1992 to 2013
$30.5M
NCI NIH HHS P50 CA058184NCRR NIH HHS 1U54RR023561-01A1
6 · The paper itself

Abstract

Traditional approaches to the preclinical investigation of cancer therapies rely on the use of established cell lines maintained in serum-based growth media. This is particularly true of small-cell lung cancer (SCLC), where surgically resected tissue is rarely available. Recent attention has focused on the need for better models that preserve the integrity of cancer stem cell populations, as well as three-dimensional tumor-stromal interactions. Here we describe a primary xenograft model of SCLC in which endobronchial tumor specimens obtained from chemo-naive patients are serially propagated in vivo in immunodeficient mice. In parallel, cell lines grown in conventional tissue culture conditions were derived from each xenograft line, passaged for 6 months, and then reimplanted to generate secondary xenografts. Using the Affymetrix platform, we analyzed gene expression in primary xenograft, xenograft-derived cell line, and secondary xenograft, and compared these data to similar analyses of unrelated primary SCLC samples and laboratory models. When compared with normal lung, primary tumors, xenografts, and cell lines displayed a gene expression signature specific for SCLC. Comparison of gene expression within the xenograft model identified a group of tumor-specific genes expressed in primary SCLC and xenografts that was lost during the transition to tissue culture and that was not regained when the tumors were reestablished as secondary xenografts. Such changes in gene expression may be a common feature of many cancer cell culture systems, with functional implications for the use of such models for preclinical drug development.

Indexed as

Gene Expression Regulation, NeoplasticAnimalsCarcinoma, Small CellDisease Models, AnimalGene Expression ProfilingHumansLung NeoplasmsMiceReproducibility of ResultsTransplantation, HeterologousTumor Cells, Cultured

Identifiers

PMID19351829
PMCPMC2821899
OpenAlexW2122147796

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.