Evidence map›Paper›PMID 19349958›Full record

SynthesisMolecular psychiatry2009

Meta-analysis of 32 genome-wide linkage studies of schizophrenia.

M Y M Ng, D F Levinson, S V Faraone, B K Suarez, L E DeLisi, T Arinami, B Riley, T Paunio, A E Pulver, Irmansyah and 72 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Molecular psychiatry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 116 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
116citing papers in PubMed, 7 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

116 citing papers in PubMed, 7 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Pooled it
  7. Meta-analysis of genome-wide linkage scans for renal function traits.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2012
    Pooled it
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Single-cell genomics and regulatory networks for 388 human brains.bioRxiv : the preprint server for biology · 2024
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review

56 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

82 authors.

M Y M NgKing's College London, Department of Medical and Molecular Genetics, London, UK.
D F Levinson
S V Faraone
B K Suarez
L E DeLisi
T Arinami
B Riley
T Paunio
A E Pulver
Irmansyah
P A Holmans
M Escamilla
D B Wildenauer
N M Williams
C Laurent
B J Mowry
L M Brzustowicz
M Maziade
P Sklar
D L Garver
G R Abecasis
B Lerer
M D Fallin
H M D Gurling
P V Gejman
E Lindholm
H W Moises
W Byerley
E M Wijsman
P Forabosco
M T Tsuang
H-G Hwu
Y Okazaki
K S Kendler
B Wormley
A Fanous
D Walsh
F A O'Neill
L Peltonen
G Nestadt
V K Lasseter
K Y Liang
G M Papadimitriou
D G Dikeos
S G Schwab
M J Owen
M C O'Donovan
N Norton
E Hare
H Raventos
H Nicolini
M Albus
W Maier
V L Nimgaonkar
L Terenius
J Mallet
M Jay
S Godard
D Nertney
M Alexander
R R Crowe
J M Silverman
A S Bassett
M-A Roy
C Mérette
C N Pato
M T Pato
J Louw Roos
Y Kohn
D Amann-Zalcenstein
G Kalsi
A McQuillin
D Curtis
J Brynjolfson
T Sigmundsson
H Petursson
A R Sanders
J Duan
E Jazin
M Myles-Worsley
M Karayiorgou
C M Lewis

Funding

MAPPING GENES FOR SCHIZOPHRENIA IN FOUNDER POPULATIONSR01MH061399 · NIMH · ROCKEFELLER UNIVERSITY · PI KARAYIORGOU, MARIA · 2000 to 2014
$7.1M
THE GENETIC EPIDEMIOLOGY OF SCHIZOPHRENIA IN IRELANDR01MH041953 · NIMH · VIRGINIA COMMONWEALTH UNIVERSITY · PI KENDLER, KENNETH SEEDMAN · 1987 to 2008
$5.2M
Molecular Genetics of Schizophrenia SusceptibilityR01MH062440 · NIMH · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI BRZUSTOWICZ, LINDA M · 2001 to 2008
$3.4M
MULTICENTER GENETIC STUDIES OF SCHIZOPHRENIAR01MH062276 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI LEVINSON, DOUGLAS FREDERICK · 2000 to 2008
$3.2M
MAMMALIAN GENOTYPING SERVICEN01HV048141 · HV · MARSHFIELD CLINIC RESEARCH FOUNDATION · PI WEBER, JAMES L. · 1994 to 2000
$3.1M
Genetic Susceptibility in SchizophreniaR01MH056242 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NIMGAONKAR, VISHWAJIT LAXMIKANT · 2002 to 2007
$2.9M
GENETICS OF SCHIZOPHRENIA IN LATINO POPULATIONSR01MH060881 · NIMH · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI ESCAMILLA, MICHAEL A · 2000 to 2003
$2.1M
GENETIC LINKAGE STUDY OF SCHIZOPHRENIAR01MH059624 · NIMH · MASSACHUSETTS MENTAL HEALTH INSTITUTE · PI TSUANG, MING T. · 1998 to 2001
$1.2M
GENETIC SUSCEPTIBILITY IN SCHIZOPHRENIAR10MH056242 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NIMGAONKAR, VISHWAJIT LAXMIKANT · 1997 to 2001
$1.2M
Admixture Mapping Schizophrenia Genes in Oceanic PalauR01MH063356 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BYERLEY, WILLIAM · 2003 to 2006
$1.0M
GENETICS OF SCHIZOPHRENIA IN LATINO POPULATIONSR01MH060875 · NIMH · LA BIOMED RES INST/ HARBOR UCLA MED CTR · PI MENDOZA, RICARDO PATRICK · 2000 to 2003
$728k
Multicenter Genetic Studies of SchizophreniaR01MH068921 · NIMH · JOHNS HOPKINS UNIVERSITY · PI PULVER, ANN E · 2004 to 2007
$521k
Medical Research Council G0400960Medical Research Council G0801418Medical Research Council G880473NMedical Research Council G9309834NHLBI NIH HHS N01 HV048141NIMH NIH HHS 1R01 MH59624-01NIMH NIH HHS 5R01MH068881NIMH NIH HHS 5R01MH068921NIMH NIH HHS 5R01MH068922NIMH NIH HHS 5 U01MH46318NIMH NIH HHS 7R01MH062276NIMH NIH HHS MH062440NIMH NIH HHS MH-41953NIMH NIH HHS MH 56242NIMH NIH HHS MH58586NIMH NIH HHS MH60875NIMH NIH HHS MH60881NIMH NIH HHS MH61399NIMH NIH HHS MH63356NIMH NIH HHS MH80299NIMH NIH HHS R01 MH041953NIMH NIH HHS R01 MH056242NIMH NIH HHS R01 MH060875NIMH NIH HHS R01 MH060881NIMH NIH HHS R01 MH061399NIMH NIH HHS R01 MH062276NIMH NIH HHS R01 MH062440NIMH NIH HHS R01 MH063356NIMH NIH HHS R01 MH068881NIMH NIH HHS R01 MH068921NIMH NIH HHS R01 MH068922NIMH NIH HHS R01 MH080299NIMH NIH HHS R01-MH44245NIMH NIH HHS R10 MH056242NIMH NIH HHS U01 MH046276NIMH NIH HHS U01 MH046289NIMH NIH HHS U01 MH046318Wellcome Trust 055379Wellcome Trust 089061
6 · The paper itself

Abstract

A genome scan meta-analysis (GSMA) was carried out on 32 independent genome-wide linkage scan analyses that included 3255 pedigrees with 7413 genotyped cases affected with schizophrenia (SCZ) or related disorders. The primary GSMA divided the autosomes into 120 bins, rank-ordered the bins within each study according to the most positive linkage result in each bin, summed these ranks (weighted for study size) for each bin across studies and determined the empirical probability of a given summed rank (P(SR)) by simulation. Suggestive evidence for linkage was observed in two single bins, on chromosomes 5q (142-168 Mb) and 2q (103-134 Mb). Genome-wide evidence for linkage was detected on chromosome 2q (119-152 Mb) when bin boundaries were shifted to the middle of the previous bins. The primary analysis met empirical criteria for 'aggregate' genome-wide significance, indicating that some or all of 10 bins are likely to contain loci linked to SCZ, including regions of chromosomes 1, 2q, 3q, 4q, 5q, 8p and 10q. In a secondary analysis of 22 studies of European-ancestry samples, suggestive evidence for linkage was observed on chromosome 8p (16-33 Mb). Although the newer genome-wide association methodology has greater power to detect weak associations to single common DNA sequence variants, linkage analysis can detect diverse genetic effects that segregate in families, including multiple rare variants within one locus or several weakly associated loci in the same region. Therefore, the regions supported by this meta-analysis deserve close attention in future studies.

Indexed as

Genetic LinkageGenetic Predisposition to DiseaseGenome-Wide Association StudyChromosomes, HumanFemaleGenome, HumanHumansLod ScoreMalePedigreeSchizophrenia

Identifiers

PMID19349958
PMCPMC2715392

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.