Evidence map›Paper›PMID 19349640›Full record

ArticleToxicological sciences : an official journal of the Society of Toxicology2009

Comparative analysis of novel noninvasive renal biomarkers and metabonomic changes in a rat model of gentamicin nephrotoxicity.

Max Sieber, Dana Hoffmann, Melanie Adler, Vishal S Vaidya, Matthew Clement, Joseph V Bonventre, Nadine Zidek, Eva Rached, Alexander Amberg, John J Callanan and 2 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Toxicological sciences : an official journal of the Society of Toxicology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 129 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Overview of Antibiotic-Induced Nephrotoxicity.Kidney international reports · 2023
    Review
  8. Article
  9. Article
  10. Urinary NMR Profiling in Pediatric Acute Kidney Injury-A Pilot Study.International journal of molecular sciences · 2020
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Observational
  16. Article
  17. Article
  18. Article
  19. Metabolomics in pediatric nephrology: emerging concepts.Pediatric nephrology (Berlin, Germany) · 2015
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Max SieberDepartment of Toxicology, University of Würzburg, 97078 Würzburg, Germany.
Dana Hoffmann
Melanie Adler
Vishal S Vaidya
Matthew Clement
Joseph V Bonventre
Nadine Zidek
Eva Rached
Alexander Amberg
John J Callanan
Wolfgang Dekant
Angela Mally
University of Würzburg · DEBrigham and Women's Hospital · USSanofi (Germany) · DEUniversity College Dublin · IE

Funding

KIDNEY INJURY MOLECULE-1 IN EPITHELIAL REPAIRR01DK072381 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI BONVENTRE, JOSEPH VINCENT · 2005 to 2025
$8.6M
Technology and Endothelial Biology of Kidney Injury Molecule-1R00ES016723 · NIEHS · BRIGHAM AND WOMEN'S HOSPITAL · PI VAIDYA, VISHAL S. · 2008 to 2010
$983k
Technology and Endothelial Biology of Kidney Injury Molecule-1K99ES016723 · NIEHS · BRIGHAM AND WOMEN'S HOSPITAL · PI VAIDYA, VISHAL S. · 2007 to 2007
$90k
NIDDK NIH HHS R01 DK072381NIEHS NIH HHS K99 ES016723NIEHS NIH HHS R00 ES016723
6 · The paper itself

Abstract

Although early detection of toxicant induced kidney injury during drug development and chemical safety testing is still limited by the lack of sensitive and reliable biomarkers of nephrotoxicity, omics technologies have brought enormous opportunities for improved detection of toxicity and biomarker discovery. Thus, transcription profiling has led to the identification of several candidate kidney biomarkers such as kidney injury molecule (Kim-1), clusterin, lipocalin-2, and tissue inhibitor of metalloproteinase 1 (Timp-1), and metabonomic analysis of urine is increasingly used to indicate biochemical perturbations due to renal toxicity. This study was designed to assess the value of a combined (1)H-NMR and gas chromatography-mass spectrometry (GC-MS) metabonomics approach and a set of novel urinary protein markers for early detection of nephrotoxicity following treatment of male Wistar rats with gentamicin (60 and 120 mg/kg bw, s.c.) for 7 days. Time- and dose-dependent separation of gentamicin-treated animals from controls was observed by principal component analysis of (1)H-NMR and GC-MS data. The major metabolic alterations responsible for group separation were linked to the gut microflora, thus related to the pharmacology of the drug, and increased glucose in urine of gentamicin-treated animals, consistent with damage to the S(1) and S(2) proximal tubules, the primary sites for glucose reabsorption. Altered excretion of urinary protein biomarkers Kim-1 and lipocalin-2, but not Timp-1 and clusterin, was detected before marked changes in clinical chemistry parameters were evident. The early increase in urine, which correlated with enhanced gene and protein expression at the site of injury, provides further support for lipocalin-2 and Kim-1 as sensitive, noninvasive biomarkers of nephrotoxicity.

Indexed as

Analysis of VarianceAnimalsAnti-Bacterial AgentsBiomarkersCell Adhesion MoleculesClusterinGas Chromatography-Mass SpectrometryGene ExpressionGentamicinsImmunohistochemistryKidneyLipocalinsMaleMetabolomicsNecrosisNuclear Magnetic Resonance, BiomolecularAnti-Bacterial AgentsBiomarkersCell Adhesion MoleculesClu protein, ratClusterinGentamicinsHavcr1 protein, ratLipocalinsTissue Inhibitor of Metalloproteinase-1

Identifiers

PMID19349640
PMCPMC4830225
OpenAlexW2146560286

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.